Table 4 Examples of better human-chimp alignments found by LAST than UCSC (mm=mismatches)
From: Split-alignment of genomes finds orthologies more accurately
Human segment | LAST alignment | UCSC alignment(s) | Gene | ||||
|---|---|---|---|---|---|---|---|
| Â | %id | mm | gaps | %id | mm | gaps | Â |
chr1:152276674–152277614 | 97 | 30 | 0 | 92 | 76 | 3 | FLG |
chr1:152280487–152281478 | 97 | 30 | 0 | 92 | 77 | 3 | FLG |
chr2:108873888–108876032 | 99 | 29 | 1 | 88 | 220 | 35 | SULT1C3 |
chr2:132248761–132251678 | 98 | 40 | 23 | 94 | 96 | 97 | MZT2A |
chr6:26521953–26522872 | 99 | 7 | 0 | 91 | 70 | 11 | HCG11 |
chr6:161039352–161043226 | 96 | 119 | 21 | 91 | 293 | 50 | LPA |
chr9:140099185–140099970 | 100 | 1 | 0 | 97 | 25 | 0 | TMEM203 |
chr11:67762787–67763389 | 99 | 6 | 1 | 95 | 28 | 3 | UNC93B1 |
chr15:28386144–28386780 | 98 | 8 | 2 | 91 | 50 | 5 | HERC2 |
chr17:36633111–36634556 | 99 | 31 | 1 | 97 | 41 | 5 | ARHGAP23 |
chr17:36634558–36635933 | 98 | 16 | 11 | 94 | 62 | 16 | ARHGAP23 |
chr19:53078564–53079296 | 97 | 14 | 8 | 77 | 68 | 105 | ZNF701 |
chr19:55262747–55265365 | 97 | 71 | 12 | 94 | 148 | 14 | KIR2DL3 |
chr22:16286739–16288612 | 96 | 42 | 27 | 90 | 131 | 56 | POTEH |
chrX:3228654–3232013 | 99 | 30 | 2 | 90 | 230 | 106 | MXRA5 |
chrX:3558846–3560429 | 98 | 21 | 8 | 94 | 77 | 19 | PRKX |
chrX:48112039–48118891 | 98 | 100 | 53 | 92 | 461 | 109 | SSX1 |