Fig. 9
From: Split-alignment of genomes finds orthologies more accurately
Deviations from the alignment model in LAST (2-split, post-masked) genome alignments. Upper row: gap length distributions. Dotted lines show the distribution modeled by a gap extension cost of 150, and dashed lines a cost of 30. Lower row: substitution rates in 200bp windows (excluding gaps). Grey lines show expected results for uniform substitution rate