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Table 1 Information about the metagenomic samples and reference genomes used in the current study

From: Inter-individual differences in the gene content of human gut bacterial species

NCBI taxID

Representative genome strain name

Contigs (n)

Genes in reference (n)

Individuals (n)

Genes in metagenomes (n)

Gene mapped to OG (n)

OG (n)

592028

Dialister invisus DSM 15470

1

2,015

16

1,905

1,343

1,081

657321

Ruminococcus bromii L2-63

1

1,852

22

1,807

1,324

1,031

511680

Butyrivibrio crossotus DSM 2876

31

2,576

13

2,493

1,768

1,253

657322

Faecalibacterium prausnitzii SL3/3

1

2,816

11

2,670

1,869

1,262

445970

Alistipes putredinis DSM 17216

11

2,795

58

2,790

1,649

1,266

537012

Bacteroides cellulosilyticus DSM 14838

66

5,771

15

5,542

4,125

2,247

483216

Bacteroides eggerthii DSM 20697

20

3,769

10

3,714

2,775

1,868

717959

Alistipes shahii WAL 8301

1

2,616

29

2,584

1,861

1,293

563193

Parabacteroides sp. D13

22

4,558

32

4,473

3,577

2,182

469586

Bacteroides sp. 1_1_6

71

5,648

41

5,639

4,232

2,468

537011

Prevotella copri DSM 18205

28

3,413

32

3,195

2,090

1,490

  1. Description of the 11 representative reference genomes is summarized according to their NCBI TaxID and strain name. Statistics regarding the number of individuals, genes (both present in reference genome and seen in all metagenomes), contigs, orthologous groups, genes mapped to orthologous groups (OGs) are shown.
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Genome Biology

ISSN: 1474-760X

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