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Table 1 Summary statistics

From: Detecting non-allelic homologous recombination from high-throughput sequencing data

 

Number of loci

Number of distinct

Median calls/

Median number

Number previously

Number positively

Median affected

Number in

Number in

Number in

 

with an event call a

loci with an NAHR

person b

of people/locus

reported c

validated d

genes/person

Africans c

Asians c

Europeans c

  

event call b

 

with call

      

Deletion

321 (2.25%)

65 (20.1%)

5.5 (1.7%)

4 (9.09%)

106 (33.0%)

59 (18.4%)

7.5

120 (37.4%)

123 (38.3%)

78 (24.3%)

Duplication

722 (5.06%)

64 (19.8%)

16 (4.94%)

3 (6.82%)

0

0

42.5

311 (43.1%)

186 (25.8%)

225 (31.2%)

Total

1,043 (7.32%)

109 (33.6%)

24 (7.41%)

5 (11.4%)

106 (10.2%)

59 (5.7%)

52

431 (41.3%)

309 (29.6%)

303 (29.1%)

  1. aOut of all 44×324=14,256 potential NAHR event loci.
  2. bOut of all possible 324 distinct loci.
  3. cOut of the number of positive event calls.
  4. dSubset of number previously reported. Validations from [3,4,17]. Non-positively validated calls were not negatively validated; see Additional file 1: Section S7.6.