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Table 1 Fasciola hepatica assembly statistics

From: The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution

Metric

Value

Scaffold N50

204 Kbp (REAPR 155 Kbpa)

Number of scaffolds ≥3 Kbp

20,158

Number of scaffolds ≥1 Kbp

45,354

Contig N50 (≥100 bp)

9.7 K bp

Number of contigs (≥100 bp)

254,014

Total assembly length

1.275 Gbp

Total length of gaps

91.6 Mbp

Repetitive content

32%

Number of RNAseq-supported gene models

22,676 (15,740b)

Mean number of exons/gene

5.3

Mean exon size (95% range)

303 bp (36 bp – 1,369 bp)

Mean intron size (95% range)

3.7 Kbp (33 bp - 17.5 Kbp)

Proportion CEGMA core eukaryotic genes found

90%

  1. aN50 following breakage of some scaffolds at areas to low support. Both assemblies are available from ENA under project accession PRJEB6687.
  2. bNumber of non-overlapping, distinct genome intervals covered by RNAseq-supported gene models.