Skip to main content

Table 8 Genes under positive selection (using FDR < 0.05) on the branch between Bombus and Apis (4 taxa tree)

From: A depauperate immune repertoire precedes evolution of sociality in bees

OrthoDB group id a

Gene b

Classification

Total sites c

Likelihood ratio d

p-value

BH-corrected q-value e

Positively selected sites f

EOG6VDNFR

dorsal

Relish

476

36.202

0.00000

0.00000

121Q, 194S, 228S, 318L, 326R, 330W, 333K, 334I, 335S, 345D, 348N, 350Q, 351N, 353A, 358Y, 359P, 363D, 367K, 368S, 369N, 372D, 373T, 375A, 376K, 377L, 380A, 384Q, 386T, 387T, 390S, 392D, 394D, 396C, 397D, 398T, 400T, 401S, 403Q, 404M, 407F, 410L, 411S, 415K, 420T, 422P, 425P, 433K, 434Q, 440V, 441P, 443E, 446Q, 447S, 448L, 453N, 454T, 458S, 462S, 463P, 465E, 467G, 468K, 471S, 472E, 473K, 474K, 476T

EOG6ZPC96

nimrod-C2

Nimrod

1802

26.848

0.00000

0.00001

37Q, 47Q, 188M, 444H, 458K, 511M, 522V, 535V, 537E, 542Q, 550K, 576C, 582E, 599Y, 612P, 617T, 619V, 626P, 628V, 633R, 643V, 644N, 663R, 669S, 677E, 693S, 1010P

EOG66Q57J

LOC100642902 (B. terr)

Serine protease inhibitor

1327

39.488

0.00000

0.00000

40G, 213S, 287E, 291D, 299V, 334V, 341S, 452S, 503T, 507H, 508S, 509D, 577G, 597D, 631T, 666D, 704K, 708S, 710A, 743S, 758K, 759W, 775Q, 778S, 820K, 856M, 858Q

EOG6BG79T

spindle-E

Small RNA regulatory pathway members

1273

7.774

0.00265

0.03328

17H, 55Q, 157D, 175S, 254N, 391Q, 492G, 749T, 751S, 787I, 832F, 1026P, 1131S, 1237N, 1248T

EOG68SF83

tep23

Thioester-containing protein

1694

10.554

0.00058

0.01087

15T, 39Y, 84S, 204P, 288G, 652A, 683S, 1070S, 1092S, 1466L, 1467S, 1470E, 1482A, 1543L

EOG6QNKCB

spatzle-1B

Spaetzle

169

7.766

0.00266

0.03328

3S, 10C, 14E, 17S, 22A, 36S, 62S, 96A, 116T, 142S

EOG6866VT

tube

Toll pathway

298

8.801

0.00151

0.02258

24S, 30S, 45M, 195L, 267L, 287V, 295N

EOG6XWDDG-1

serpin-10A

Serine protease inhibitor

385

11.507

0.00035

0.00743

88S, 253F, 335S, 341C, 344P

EOG6W3R35

belle

Small RNA regulatory pathway members

683

14.230

0.00008

0.00303

134T, 278I, 602S, 633Q, 664S

EOG6KKWHX

argonaute-2

Small RNA regulatory pathway members

896

12.187

0.00024

0.00665

44S, 49S, 746S

EOG6HHMH6

serpin-23

Scavenger receptor

2066

10.002

0.00078

0.01303

1459K

EOG66DJHX-1

dscam-like protein

Immunoglobulin

1847

12.000

0.00027

0.00665

None

  1. aGroup identifiers are from OrthoDB 6 (http://cegg.unige.ch/orthodb6).
  2. bNumber of codons remaining in the alignment after trimming with Gblocks.
  3. cComparison of Branch-site model A versus a constrained version with ω 2 = 1.
  4. eMultiple test correction by the method of Benjamini and Hochberg to control the false discovery rate (only groups where FDR < 0.05 are shown).
  5. fSites are classified as under positive selection if the Bayesian posterior probability > 0.75 (> 0.95 in bold). The reference sequence is from A. mellifera.
Back to article page

Genome Biology

ISSN: 1474-760X

Contact us