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Table 4 Genes under positive selection (using FDR < 0.05) across the whole phylogeny (4 taxa tree)

From: A depauperate immune repertoire precedes evolution of sociality in bees

OrthoDB group id a Gene b Classification sites c Total ratio d Likelihood p-value q-value e BH-corrected sites f Positively selected
EOG66DJHX-2 dscam Immunoglobulin 777 186.607 0.00000 0.00000 4L, 6R, 8S, 11D, 13G, 14D, 20Q, 22A, 24M, 26A, 30T, 35A, 37T, 43E, 44P, 52R, 54T, 56I, 58T, 60P, 63K, 65I, 66H
EOG6HHMH6 serpin-23 Scavenger receptor 2066 15.366 0.00046 0.00987 36S, 87S, 90Q, 92K, 288P, 334S, 397N, 431S, 490D, 761P, 772R, 811K, 815T, 816Y, 824S, 877S, 1782K, 1788E
EOG66DJHQ aubergine Small RNA regulatory path-members 787 15.955 0.00034 0.00858 219K, 269K, 287A, 342S, 348D, 359G, 397R, 410E, 415P, 431G, 436D, 621K
EOG64B8H5 CLIP-A10 CLIP serine protease 816 29.218 0.00000 0.00003 1I, 3H, 21V, 25P, 37P, 291K, 333T, 335T, 344S, 457S
EOG6KKWHX argonaute-2 Small RNA regulatory pathway members 896 20.248 0.00004 0.00150 24W, 27N, 43S, 48Q, 58S, 59N, 81D, 103I, 519F
EOG6J3TZ2 cardinal Peroxidase 1203 14.276 0.00079 0.01489 35M, 46S, 538A, 711A, 742E, 743T, 882D, 931V
EOG6VX0M3 ark Caspase 1263 17.732 0.00014 0.00423 67G, 386G, 752T, 1028G, 1078T, 1112F
EOG6JQ2CF LOC100642575 (B. terr) Scavenger receptor 924 22.212 0.00002 0.00075 75S, 78P, 111I, 112P, 647S
EOG6W9GK1-3 rm62-B1 Small RNA regulatory pathway members 431 11.766 0.00279 0.04179 425A, 430S, 431E
EOG634TNR pellino Toll pathway 431 12.386 0.00204 0.03407 1P, 2S
  1. aGroup identifiers are from OrthoDB 6 (http://cegg.unige.ch/orthodb6).
  2. bUnless otherwise specified, gene names are taken from the A. mellifera or D. melanogaster orthologs.
  3. cTotal number of codons in the alignment after trimming with Gblocks.
  4. dComparison of model M7 versus M8.
  5. eMultiple test correction by the method of Benjamini and Hochberg to control the false discovery rate (only groups where FDR < 0.05 are shown).
  6. fSites are classified as under positive selection if the Bayesian posterior probability > 0.75 (>0.95 in bold italic). Sites where \( E\left[\omega \right]-\sqrt{\mathrm{Var}\left(\omega \right)}>1.25 \) are italic.
  7. Reference sequence taken from A. mellifera.