Table 3 MAD values, signal, and signal-to-noise ratios of CopywriteR, onTarget, and LCWGS-derived copy number profiles from the murine breast cancer sample set
From: CopywriteR: DNA copy number detection from off-target sequence data
| Â | CopywriteR | LC-WGS | onTarget | Â | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
MAD | Signal | SNR | MAD | Signal | SNR | MAD | Signal | SNR | Genomic location | |
T60 | 0.262 | 0.523 | 2.00 | 0.176 | 0.501 | 2.85 | 0.159 | 0.467 | 2.94 | chr6: 52-120Â Mb |
T56 | 0.250 | 0.494 | 1.98 | 0.170 | 0.513 | 3.02 | 0.172 | 0.568 | 3.30 | chr16: 12-25Â Mb |
T20 | 0.314 | 1.099 | 3.50 | 0.271 | 0.978 | 3.61 | 0.653 | 1.135 | 1.74 | chr8:7-16Â Mb |
T62 | 0.265 | 0.421 | 1.59 | 0.185 | 0.403 | 2.18 | 0.160 | 0.376 | 2.35 | chr8: 3-47Â Mb |
T19 | 0.252 | 1.314 | 5.21 | 0.163 | 1.272 | 7.80 | 0.591 | 1.24 | 2.10 | chr8:22-39Â Mb |
T2 | 0.395 | 0.303 | 0.77 | 0.255 | 0.335 | 1.31 | 0.230 | 0.344 | 1.50 | chr5:38-152Â Mb |
T3 | 0.293 | 0.401 | 1.37 | 0.212 | 0.361 | 1.70 | 0.181 | 0.286 | 1.58 | chr15:87-104Â Mb |
T7 | 0.597 | 0.395 | 0.66 | 0.538 | 0.398 | 0.74 | 0.330 | 0.371 | 1.12 | chr6 |
T50 | 0.262 | 0.477 | 1.82 | 0.193 | 0.486 | 2.52 | 0.175 | 0.462 | 2.64 | chr5 |