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Table 3 MAD values, signal, and signal-to-noise ratios of CopywriteR, onTarget, and LCWGS-derived copy number profiles from the murine breast cancer sample set

From: CopywriteR: DNA copy number detection from off-target sequence data

  CopywriteR LC-WGS onTarget  
MAD Signal SNR MAD Signal SNR MAD Signal SNR Genomic location
T60 0.262 0.523 2.00 0.176 0.501 2.85 0.159 0.467 2.94 chr6: 52-120 Mb
T56 0.250 0.494 1.98 0.170 0.513 3.02 0.172 0.568 3.30 chr16: 12-25 Mb
T20 0.314 1.099 3.50 0.271 0.978 3.61 0.653 1.135 1.74 chr8:7-16 Mb
T62 0.265 0.421 1.59 0.185 0.403 2.18 0.160 0.376 2.35 chr8: 3-47 Mb
T19 0.252 1.314 5.21 0.163 1.272 7.80 0.591 1.24 2.10 chr8:22-39 Mb
T2 0.395 0.303 0.77 0.255 0.335 1.31 0.230 0.344 1.50 chr5:38-152 Mb
T3 0.293 0.401 1.37 0.212 0.361 1.70 0.181 0.286 1.58 chr15:87-104 Mb
T7 0.597 0.395 0.66 0.538 0.398 0.74 0.330 0.371 1.12 chr6
T50 0.262 0.477 1.82 0.193 0.486 2.52 0.175 0.462 2.64 chr5