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Table 2 MAD values, signal, and signal-to-noise ratios of CopywriteR and arrayCGH-derived copy number profiles from the murine small-cell lung cancer sample set

From: CopywriteR: DNA copy number detection from off-target sequence data

 

CopywriteR

Nimblegen

 

MAD

Signal

SNR

MAD

Signal

SNR

Genomic location

T21

0.351

0.585

1.67

0.246

0.49

1.99

chr2: 141-182 Mb

T22

0.341

0.532

1.56

0.276

0.493

1.79

chr2: 147-182 Mb

T23

0.479

-0.626

1.31

0.219

-0.443

2.02

chr7: 116-153 Mb

T24

0.580

1.115

1.92

0.274

0.737

2.69

chr10: 80-108 Mb