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Table 1 Fraction of null segments for ten ENCODE cell types

From: Spectacle: fast chromatin state annotation using spectral learning

Binarization

Cell type

 

GM12878

H1-hESC

HeLa-S3*

HepG2*

Scripture [38]

0.5

0.59

0.47

0.52

Poisson binarization [7]

0.92

0.92

0.89

0.89

 

HMEC

HSMM

HUVEC

K562

Scripture [38]

0.48

0.49

0.55

0.56

Poisson binarization [7]

0.90

0.89

0.89

0.91

 

NHEK

NHLF

  

Scripture [38]

0.57

0.51

  

Poisson binarization [7]

0.91

0.91

  
  1. Cell types with * have only seven available epigenetic marks for the Poisson binarization data set. All other cell types have eight epigenetic marks for both binarization data sets.
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Genome Biology

ISSN: 1474-760X

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