Figure 6

Analysis of CX samples and joint analysis of all samples. Turquoise densities are for samples from the right side of the tumor and the pink ones are for the left side. (A) Maximum depth of trees. Trees from the right side have posterior maximum depth between 2 and 3, while trees from the left side have posterior maximum depth between 3 and 4. (B) Total branch length of trees. Trees from the right side have slightly shorter total branch lengths than the trees from the left side. (C) Number of clones in a tree. Trees from the right side contain fewer clones than trees from the left side. (D) Mean number of clones versus mean maximum depth of trees. With these two summary statistics of trees, samples from the left and right can be separated very clearly.