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Table 2 Summary statistics for three component maps and final consensus anchoring (‘Anchored’) in the Medicago study

From: ALLMAPS: robust scaffold ordering based on multiple maps

  OpticalMap (w = 3) GeneticMap (w = 2) Chickpea (w = 1) Anchored Unplaced
Linkage groups 8 12 98 8 n.a.
Markers (unique) 25,491 2,125 16,275 43,833 58
Markers per Mb 70.2 5.8 43.2 114.0 1.6
N50 scaffolds 23 23 23 23 0
Scaffolds 123 200 229 284 4,522
Scaffolds with 1 marker 0 68 53 84 2
Scaffolds with 2 markers 0 21 26 26 1
Scaffolds with 3 markers 0 22 10 15 1
Scaffolds with ≥=4 markers 123 89 140 159 8
Total bases 363,160,642 363,369,814 376,760,724 384,460,302 36,076,813
(Percent of genome) (86.4%) (86.4%) (89.6%) (91.4%) (8.6%)
  1. Scaffolds with no markers, or ambiguous placements, are separately counted (‘Unplaced’). The marker density for the anchored and unplaced scaffolds represent the sum of unique markers from all input datasets.