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Table 1 Summary statistics for each of the four component maps (BCFemale, BCMale, JMFemale, JMMale, with equal weights) and final consensus anchoring (‘Anchored’) in the yellow catfish study

From: ALLMAPS: robust scaffold ordering based on multiple maps

  BCFemale BCMale JMFemale JMMale Anchored Unplaced
Linkage groups 26 27 26 27 26 n.a.
Markers (unique) 2,507 2,442 2,495 2,434 4,941 8
Markers per Mb 4.8 4.6 4.8 4.6 8.5 0.1
N50 scaffolds 158 160 158 160 161 1
Scaffolds 679 709 673 707 942 8,282
Scaffolds with 1 marker 291 302 286 303 325 0
Scaffolds with 2 markers 109 140 109 138 168 2
Scaffolds with 3 markers 63 65 63 64 92 0
Scaffolds with ≥4 markers 216 202 215 202 357 1
Total bases 524,479,992 534,215,264 523,736,261 533,964,013 580,865,792 138,224,118
(Percent of genome) (72.9%) (74.3%) (72.8%) (74.3%) (80.8%) (19.2%)
  1. Scaffolds with no markers, or ambiguous placements, are separately counted (‘Unplaced’). The marker density for the anchored and unplaced scaffolds represent the sum of unique markers from all input datasets.