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Figure 2 | Genome Biology

Figure 2

From: ALLMAPS: robust scaffold ordering based on multiple maps

Figure 2

Pseudochromosome 1 of yellow catfish genome, reconstructed from four input maps - BCFemale, BCMale, JMFemale, JMMale, with equal weights of 1. (A) CMAP-style presentation with lines connecting the physical positions on the reconstructed chromosome and the map positions. (B) Set of four scatter plots, with dots representing the physical position on the chromosome (x-axis) versus the map location (y-axis). Adjacent scaffolds within the reconstructed chromosome are shown as boxes with alternating shades, marking the boundaries of the component scaffolds. The ρ-value on each scatter plot measures the Pearson correlation coefficient, with values in the range of -1 to 1 (values closer to -1 and 1 indicate near-perfect colinearity).

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