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Table 2 Genome scaffolds putatively linked to the P. veris S -locus

From: The draft genome of Primula veris yields insights into the molecular basis of heterostyly

Scaffold ID Length Genes RE DE genes L-morph RNA S-morph RNA S-/L-morph SNP ratio Comments
Contig1892 36,436 1 39 0 5 5 0 PvSLL1 (Li et al. [49])
Contig927 105,749 7 104 1a 18 20 1.1 PvSLL2 (Li et al. [49])
Contig2830 45,782 4 38 0 10 11 1.1 PveGLO1 (PvGLO P1/P2; Li et al. [60])
Contig1404 48,939 1 31 1 0 0 0 PveGLO2 (PvGLO T; Li et al. [60])
Contig437 106,280 6 52 0 8 40 5 RAD loci 37812 and 101982
Contig478 326,606 21 379 2 29 39 1.3 RAD locus 41358
Contig578 132,036 14 119 1b 16 96 6 RAD locus 51955
Contig273 185,956 11 132 1c 62 98 1.5 RAD loci 9274 and 59102
  1. aDifferentially expressed only in P. veris floral tissues.
  2. bDifferentially expressed only in P. vulgaris floral tissues.
  3. cDifferentially expressed only in P. veris leaf tissues.
  4. SNPs identified by mapping RNAseq reads from L- and S-morph flowers to the genome assembly are presented.
  5. DE Genes = the number of genes on the scaffold that show significant morph-specific differential expression; RE = number of repetitive elements predicted.