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Table 3 Assemblers and number of assemblies generated by them (using different parameter settings) for the correlation experiments

From: Evaluation of de novo transcriptome assemblies from RNA-Seq data

Assembler

Trinity

Oases

SOAPdenovo-Trans

Trans-ABySS

Version

r2012-03-17

0.2.06

1.01

1.3.2

Number of assemblies

86

73

51

1

  1. SOAPdenovo-Trans and Trans-ABySS were not run on the strand-specific data sets.