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Table 3 Assemblers and number of assemblies generated by them (using different parameter settings) for the correlation experiments

From: Evaluation of de novo transcriptome assemblies from RNA-Seq data

Assembler Trinity Oases SOAPdenovo-Trans Trans-ABySS
Version r2012-03-17 0.2.06 1.01 1.3.2
Number of assemblies 86 73 51 1
  1. SOAPdenovo-Trans and Trans-ABySS were not run on the strand-specific data sets.