From: Evaluation of de novo transcriptome assemblies from RNA-Seq data
 | KC score | Contig F1 | Nucleotide F1 |
---|---|---|---|
RSEM-EVAL score | 0.99 | 0.83 | 0.46 |
Genovo score | 0.96 | 0.80 | 0.53 |
ALE score | 0.64 | 0.45 | 0.62 |
N50 | 0.22 | 0.33 | −0.31 |
Number of nucleotides | 0.13 | 0.29 | −0.21 |
in assembly | Â | Â | Â |
Number of unique proteins | 0.68 | 0.81 | 0.73 |
matched | Â | Â | Â |
Average ortholog hit ratio | 0.31 | 0.31 | −0.19 |