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Figure 6 | Genome Biology

Figure 6

From: Evaluation of de novo transcriptome assemblies from RNA-Seq data

Figure 6

Correlation of RSEM-EVAL score with reference-based measures for strand non-specific single-end data sets. Scatter plots are shown for the simulated (top row) and real mouse (bottom row) data sets and for both the nucleotide-level F 1 (left column) and contig-level F 1 (center column) measures. For comparison, scatter plots of the nucleotide-level F 1 against the contig-level F 1 are shown (right column). Spearman’s rank correlation coefficient (bottom-right corner of each plot) was computed for each combination of data set and reference-based measure.

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