Table 1 Endogenous viral element copy numbers in avian genomes
From: Low frequency of paleoviral infiltration across the avian phylogeny
Species name | Hepadna- | Borna- | Circo- | Parvo- | Retroviral copy number | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Total | Alpha- | Beta- | Gamma- | Epsilon- | Others a |
Acanthisitta chloris | 2 | 0 | 0 | 1 | 302 | 8 | 111 | 160 | 9 | 14 |
Anas platyrhynchos | 4 | 0 | 0 | 0 | 281 | 7 | 54 | 186 | 17 | 17 |
Antrostomus carolinensis | 2 | 0 | 0 | 0 | 246 | 15 | 76 | 119 | 16 | 20 |
Apaloderma vittatum | 2 | 0 | 0 | 0 | 258 | 10 | 97 | 130 | 11 | 10 |
Aptenodytes forsteri | 2 | 0 | 0 | 0 | 232 | 11 | 80 | 104 | 12 | 25 |
Balearica regulorum | 2 | 0 | 0 | 0 | 244 | 13 | 65 | 113 | 23 | 30 |
Buceros rhinoceros | 3 | 0 | 0 | 0 | 217 | 9 | 59 | 113 | 12 | 24 |
Calypte anna | 3 | 4 | 0 | 0 | 424 | 27 | 181 | 157 | 17 | 42 |
Cariama cristata | 3 | 0 | 0 | 0 | 315 | 13 | 78 | 176 | 20 | 28 |
Cathartes aura | 2 | 0 | 0 | 0 | 199 | 11 | 33 | 115 | 11 | 29 |
Chaetura pelagica | 2 | 1 | 0 | 0 | 383 | 15 | 113 | 213 | 13 | 29 |
Charadrius vociferus | 1 | 0 | 0 | 0 | 467 | 25 | 161 | 221 | 18 | 42 |
Chlamydotis macqueenii | 1 | 0 | 0 | 1 | 216 | 8 | 50 | 127 | 10 | 21 |
Columba livia | 2 | 0 | 0 | 0 | 245 | 11 | 81 | 116 | 17 | 20 |
Colius striatus | 1 | 0 | 0 | 0 | 237 | 9 | 94 | 110 | 7 | 17 |
Corvus brachyrhynchos | 1 | 0 | 0 | 2 | 1,032 | 13 | 475 | 472 | 22 | 50 |
Cuculus canorus | 2 | 0 | 0 | 0 | 191 | 11 | 73 | 95 | 2 | 10 |
Egretta garzetta | 2 | 0 | 1 | 1 | 289 | 23 | 95 | 129 | 16 | 26 |
Eurypyga helias | 2 | 0 | 0 | 0 | 288 | 6 | 104 | 147 | 12 | 19 |
Falco peregrinus | 2 | 0 | 0 | 0 | 336 | 15 | 90 | 196 | 7 | 28 |
Fulmarus glacialis | 2 | 0 | 0 | 0 | 245 | 10 | 65 | 121 | 11 | 38 |
Gallus gallus | 0 | 0 | 0 | 0 | 573 | 21 | 146 | 228 | 54 | 124 |
Gavia stellata | 4 | 0 | 0 | 0 | 207 | 12 | 37 | 125 | 12 | 21 |
Geospiza fortis | 10 | 0 | 1 | 0 | 785 | 11 | 340 | 371 | 26 | 37 |
Haliaeetus albicilla | 2 | 0 | 0 | 0 | 301 | 11 | 103 | 136 | 15 | 36 |
Haliaeetus leucocephalus | 2 | 0 | 0 | 0 | 419 | 23 | 134 | 190 | 27 | 45 |
Leptosomus discolor | 3 | 0 | 0 | 0 | 301 | 17 | 96 | 141 | 17 | 30 |
Manacus vitellinus | 4 | 0 | 0 | 1 | 324 | 7 | 142 | 151 | 6 | 18 |
Meleagris gallopavo | 0 | 0 | 0 | 0 | 303 | 7 | 73 | 140 | 21 | 62 |
Melopsittacus undulatus | 38 | 0 | 0 | 0 | 485 | 27 | 117 | 284 | 26 | 31 |
Merops nubicus | 2 | 0 | 0 | 0 | 418 | 11 | 149 | 191 | 31 | 36 |
Mesitornis unicolor | 1 | 0 | 0 | 1 | 451 | 10 | 153 | 242 | 21 | 25 |
Nestor notabilis | 5 | 0 | 1 | 0 | 223 | 8 | 65 | 116 | 20 | 14 |
Nipponia nippon | 3 | 0 | 0 | 0 | 302 | 35 | 79 | 127 | 28 | 33 |
Opisthocomus hoazin | 1 | 0 | 0 | 1 | 425 | 10 | 151 | 208 | 21 | 35 |
Pelecanus crispus | 2 | 0 | 0 | 3 | 283 | 13 | 86 | 114 | 22 | 48 |
Phalacrocorax carbo | 68 | 0 | 0 | 0 | 305 | 11 | 87 | 153 | 27 | 27 |
Phaethon lepturus | 2 | 0 | 0 | 0 | 480 | 9 | 110 | 312 | 14 | 35 |
Phoenicopterus ruber | 2 | 0 | 0 | 0 | 209 | 9 | 54 | 100 | 20 | 26 |
Picoides pubescens | 2 | 1 | 0 | 0 | 502 | 9 | 164 | 278 | 20 | 31 |
Podiceps cristatus | 3 | 0 | 0 | 0 | 366 | 7 | 123 | 187 | 23 | 26 |
Pterocles gutturalis | 1 | 0 | 0 | 1 | 165 | 10 | 43 | 82 | 8 | 22 |
Pygoscelis adeliae | 2 | 0 | 0 | 0 | 244 | 12 | 64 | 123 | 21 | 24 |
Struthio camelus | 2 | 0 | 0 | 0 | 132 | 7 | 30 | 61 | 8 | 26 |
Taeniopygia guttata | 13 | 0 | 0 | 1 | 725 | 19 | 302 | 322 | 34 | 48 |
Tauraco erythrolophus | 1 | 0 | 0 | 0 | 397 | 5 | 168 | 198 | 5 | 21 |
Tinamus major | 3 | 0 | 2 | 0 | 328 | 8 | 148 | 140 | 7 | 25 |
Tyto alba | 5 | 0 | 0 | 0 | 477 | 10 | 169 | 244 | 16 | 38 |