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Table 3 Comparison to the 31S. pneumoniae Mugsy benchmark

From: The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Method Time Core (bp) LCBs
Parsnp 0.3 min 1,428,407 1,171
Mugsy 100 min 1,590,820 2,394
Mauve 377 min 1,568,715 1,366
NUCmer + TBA 80 min 1,457,575 27,075
  1. Time: Method runtime from input to output. Core: Size of the aligned core genome measured in base pairs. LCBs: Number of locally colinear blocks in the alignment.