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Table 3 Comparison to the 31 S. pneumoniae Mugsy benchmark

From: The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Method

Time

Core (bp)

LCBs

Parsnp

0.3 min

1,428,407

1,171

Mugsy

100 min

1,590,820

2,394

Mauve

377 min

1,568,715

1,366

NUCmer + TBA

80 min

1,457,575

27,075

  1. Time: Method runtime from input to output. Core: Size of the aligned core genome measured in base pairs. LCBs: Number of locally colinear blocks in the alignment.
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Genome Biology

ISSN: 1474-760X

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