| |
Standard
|
Hybrid selection
|
|---|
|
LASV sample
|
Total reads (×10 6)
|
Median coverage
|
Normalized coverage a
|
Assembled LASV genome?
|
Total reads (×10 6)
|
Median coverage
|
Normalized coverage a
|
Assembled LASV genome?
|
|---|
|
G090
|
5.2
|
1
|
0.28
|
No
|
1.2
|
20
|
19.25
|
Yes
|
|
G2230
|
1.3
|
2
|
7.73
|
No
|
1.2
|
1
|
24.84
|
No
|
|
G733
|
6.9
|
85
|
17.18
|
Yes
|
1.3
|
527
|
636.71
|
Yes
|
|
G771
|
24.5
|
65
|
3.55
|
Yes
|
2.5
|
14
|
12.56
|
Yes
|
|
ISTH0073
|
35.0
|
115
|
3.86
|
Yes
|
1.5
|
208
|
197.28
|
Yes
|
|
ISTH0230
|
7.3
|
4
|
0.33
|
No
|
1.3
|
6
|
4.28
|
Yes
|
|
ISTH1137
|
8.1
|
18
|
2.86
|
Yes
|
8.0
|
47
|
6.84
|
Yes
|
|
ISTH2020
|
8.9
|
28
|
5.26
|
Yes
|
1.2
|
53
|
78.84
|
Yes
|
|
ISTH2025
|
40.2
|
13
|
0.60
|
Yes
|
1.2
|
30
|
43.83
|
Yes
|
|
ISTH2050
|
6.9
|
20
|
3.44
|
Yes
|
1.2
|
18
|
41.94
|
Yes
|
|
LM032
|
14.9
|
121
|
8.99
|
Yes
|
12.3
|
1,003
|
88.18
|
Yes
|
|
LM222
|
6.3
|
6
|
0.96
|
Yes
|
2.6
|
390
|
158.73
|
Yes
|
|
Z002
|
5.8
|
0
|
0.08
|
No
|
1.1
|
23
|
26.09
|
Yes
|
- aAverage base coverage per 1 million reads. Successful LASV genome assembly required >1× coverage of 90% of LASV ORF covered. Coverage metrics are based upon unique, non-duplicated LASV reads. G-series: Sierra Leone clinical isolates (4). ISTH series: Nigeria clinical isolates (6). LM and Z series: Mastomys natalensis isolates. Other metrics including average (×) coverage and % genome coverage at >1× are included in Additional file 1: Table S2.
