Table 1 Genome-wide statistics for the S. erinaceieuropaei assembly and gene predictions
Genome statistics | Â |
|---|---|
Size of genome (Gb) | 1.26 |
GC content (%) | 46 |
Number of scaffolds | 483,112 |
N50 | 4,647 |
Largest scaffold (bp) | 89,810 |
Number of predicted genes | 39,856 |
Gene density per Mb | 31.6 |
Length of proteome (amino acids) | 6,844,057 |
Maximum protein length (amino acids) | 1,947 |
Average protein length (amino acids) | 172 |
Average exon length (bp) | 259 |
Median exon length (bp) | 213 |
Average exons per transcript | 2 |
Median exons per transcript | 2 |
Total length of contained introns (Mb) | 41 |
Average intron length (bp) | 1,065 |
Median intron length (bp) | 418 |
CEGMA | 73/248 |
BLAST output against CEGMA | 231/248 |