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Table 7 Summary of unaligned bases by reference annotation relative to the Indica reference

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

 

mRNA

CDS

Repetitive bp (>100× kmer coverage)

Nipponbare

9,768,022

4,809,510

33,934,310

IR64

7,629,670

3,993,153

23,255,924

DJ123

5,999,753

1,947,112

23,805,398

  1. Note that only CDS and mRNA annotations are available for the reference Indica assembly.
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Genome Biology

ISSN: 1474-760X

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