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Table 7 Summary of unaligned bases by reference annotation relative to the Indica reference

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

  mRNA CDS Repetitive bp (>100× kmer coverage)
Nipponbare 9,768,022 4,809,510 33,934,310
IR64 7,629,670 3,993,153 23,255,924
DJ123 5,999,753 1,947,112 23,805,398
  1. Note that only CDS and mRNA annotations are available for the reference Indica assembly.