Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

Table 4 Summary of unaligned bases by reference annotation

	Non-coding exon	5′ UTR	3′ UTR	mRNA	Coding sequence	Repetitive bp (>100× k-mer coverage)
Nipponbare	12,344	75,443	80,518	984,489	301,525	10,863,120
IR64	129,428	902,520	638,856	6,827,679	1,706,454	29,685,919
DJ123	114,735	865,470	601,928	6,418,865	1,519,686	24,505,588

Repeats were evaluated by analyzing their k-mer coverage using the same method as above.

ISSN: 1474-760X