Skip to main content

Table 3 Summary of unaligned reference regions

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

  Total bp Regions Average size Maximum size Mean k-mer coverage
Nipponbare 11,750,969 57,821 203 ± 350 12,773 12,210×
IR64 41,639,095 133,536 311 ± 921 27,087 7,938×
DJ123 37,010,281 122,589 302 ± 931 26,236 6,121×
  1. Mean k-mer coverage was evaluated by counting the k-mers in a sample of 400 M unassembled reads in each of the three genomes, and evaluating those counts along the reference sequence.