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Table 2 Comparison of the three de novo assemblies to the Nipponbare reference (IRGSP-1.0)

From: Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

  Unaligned reference bases Unaligned assembly bases Average ID SNPs and small indels Indels > 5 bp Inversions Relocations Translocations
Nipponbare 3.14% 0.31% 99.94% 57,459 3,445 131 252 617
IR64 11.08% 8.94% 98.91% 2,917,780 80,631 1,004 1,721 7,060
DJ123 9.85% 8.55% 98.93% 2,933,257 80,346 1,007 1,615 6,683