Skip to main content

Table 1 Datasets used in the benchmark

From: Bayesian transcriptome assembly

Sample

Platform

Approximate depth

Accession

Reference

Human K562 cells(replicate 1)

Illumina

125 million

[SRX110318] a

[11]

Human K562 cells(replicate 2)

Illumina

88 million

[SRX110318] a

[11]

Human H1 cells(replicate 1)

Illumina

41 million

[SRX082572] a

[11]

Human H1 cells(replicate 2)

Illumina

37 million

[SRX082572] a

[11]

Human H1 cells

PacBio

8 million

[GSE51861] b

[15]

Mouse dendriticcells

Illumina

53 million

[SRX062280] a

[12]

  1. aNCBI Sequence Read Archive.
  2. bNCBI Gene Expression Omnibus.