Skip to main content

Table 1 List of the non-clonal mutations identified in the BCR-ABL1 fusion gene from imatinib-resistant K562 clones

From: Erratum to: The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas

Samples

Position

AA change

Codon change

Sequence context

Control

1409

E495G

GAA?>?GGA

 

1472

R491Q

CGG?>?CAG

GCCGG

1503

Silent

TTT?>?TTC

 

AID

298

G100C

GGC?>?TGC

GCCTA

395

Silent

AAA?>?AAG

 

568

G190D

GGC?>?GAC

TGCCA

633

T212A

ACG?>?GCG

 

Rat APOBEC1

344

G155D

GGC?>?GAC

GGCCA

607

L203M

CTG?>?ATG

CCCTG

613

E205K

GAG?>?AAG

CTCGG

764

K255T

AAG?>?ACG

 

987

Silent

GGG?>?GGT

TTCCC

Human APOBEC1

669

Silent

AGC?>?AGT

AGCCG

758

R253H

CGC?>?CAC

TGCGC

841*

Silent

CTG?>?TTG

AGCTG

697

H233D

CAT?>?GAT

TTCAT

699

H233D

CAT?>?GAC

 

1149*

Silent

GCC?>?GCA

GCCAT

1245*

F415L

TTT?>?TTG

 
  1. The region analyzed (encompassing exon 13 of BCR and exon 9 of ABL1) includes the imatinib-binding region of the fusion gene. The asterisk indicates mutations found in the same clone. The local sequence context for the mutations at cytosines is shown. Compared to the AID-induced mutations found in previous reports (mutations in approximately 30% of the sequences) [41], [42], we found approximately one mutation in each of the clones analyzed. This is explained by the different procedures we used to select resistant clones: whereas the other studies focused on competing bulk populations of AID-transfected GFP(+) cells and control GFP(?) cells, we analyzed individual clones arising from the same number of cells plated in the presence of imatinib.