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Table 1 Summary of the experiments performed for the RNA-Seq analysis

From: Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins

Plant Strain Concentration Time point
Tomato DC3000 ΔfliCa 5 × 106Δcfu/ml 6 h
RG-PtoRb DC3000 ΔavrPto ΔavrPtoBc
DC3000 ΔavrPto ΔavrPtoB ΔfliCd
  1. aPseudomonas syringae pv. tomato (Pst) DC3000 mutant, lacking flagellin. bTomato Rio Grande-PtoR plants (Pto/Pto, Prf/Prf). cPst DC3000 mutant, lacking AvrPto and AvrPtoB effectors. dPst DC3000 mutant, lacking AvrPto, AvrPtoB and flagellin.