TY - JOUR AU - Schwessinger, B. AU - Ronald, P. C. PY - 2012 DA - 2012// TI - Plant innate immunity: perception of conserved microbial signatures JO - Annu Rev Plant Biol VL - 63 UR - https://doi.org/10.1146/annurev-arplant-042811-105518 DO - 10.1146/annurev-arplant-042811-105518 ID - Schwessinger2012 ER - TY - JOUR AU - Boller, T. AU - He, S. Y. PY - 2009 DA - 2009// TI - Innate immunity in plants: an arms race between pattern recognition receptors in plants and effectors in microbial pathogens JO - Science VL - 324 UR - https://doi.org/10.1126/science.1171647 DO - 10.1126/science.1171647 ID - Boller2009 ER - TY - JOUR AU - Dodds, P. N. AU - Rathjen, J. P. PY - 2010 DA - 2010// TI - Plant immunity: towards an integrated view of plant-pathogen interactions JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2812 DO - 10.1038/nrg2812 ID - Dodds2010 ER - TY - JOUR AU - Segonzac, C. AU - Zipfel, C. PY - 2011 DA - 2011// TI - Activation of plant pattern-recognition receptors by bacteria JO - Curr Opin Microbiol VL - 14 UR - https://doi.org/10.1016/j.mib.2010.12.005 DO - 10.1016/j.mib.2010.12.005 ID - Segonzac2011 ER - TY - JOUR AU - Nguyen, H. P. AU - Chakravarthy, S. AU - Velásquez, A. C. AU - McLane, H. S. AU - Zeng, L. AU - Park, D. -. W. AU - Collmer, A. AU - Martin, G. B. PY - 2010 DA - 2010// TI - Methods to study PAMP-triggered immunity using tomato and Nicotiana benthamiana JO - Mol Plant Microbe Interact VL - 23 UR - https://doi.org/10.1094/MPMI-23-8-0991 DO - 10.1094/MPMI-23-8-0991 ID - Nguyen2010 ER - TY - JOUR AU - Maekawa, T. AU - Kufer, T. A. AU - Schulze-Lefert, P. PY - 2011 DA - 2011// TI - NLR functions in plant and animal immune systems: so far and yet so close JO - Nat Immunol VL - 12 UR - https://doi.org/10.1038/ni.2083 DO - 10.1038/ni.2083 ID - Maekawa2011 ER - TY - JOUR AU - Jones, J. D. AU - Dangl, J. L. PY - 2006 DA - 2006// TI - The plant immune system JO - Nature VL - 444 UR - https://doi.org/10.1038/nature05286 DO - 10.1038/nature05286 ID - Jones2006 ER - TY - JOUR AU - Pedley, K. F. AU - Martin, G. B. PY - 2003 DA - 2003// TI - Molecular basis of Pto-mediated resistance to bacterial speck disease in tomato JO - Annu Rev Phytopathol VL - 41 UR - https://doi.org/10.1146/annurev.phyto.41.121602.143032 DO - 10.1146/annurev.phyto.41.121602.143032 ID - Pedley2003 ER - TY - JOUR AU - Oh, C. S. AU - Martin, G. B. PY - 2011 DA - 2011// TI - Effector-triggered immunity mediated by the Pto kinase JO - Trends Plant Sci VL - 16 UR - https://doi.org/10.1016/j.tplants.2010.11.001 DO - 10.1016/j.tplants.2010.11.001 ID - Oh2011 ER - TY - JOUR AU - Gomez-Gomez, L. AU - Boller, T. PY - 2000 DA - 2000// TI - FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis JO - Mol Cell VL - 5 UR - https://doi.org/10.1016/S1097-2765(00)80265-8 DO - 10.1016/S1097-2765(00)80265-8 ID - Gomez-Gomez2000 ER - TY - JOUR AU - Zeng, W. AU - He, S. Y. PY - 2010 DA - 2010// TI - A prominent role of the flagellin receptor FLAGELLIN-SENSING2 in mediating stomatal response to Pseudomonas syringae pv tomato DC3000 in Arabidopsis JO - Plant Physiol VL - 153 UR - https://doi.org/10.1104/pp.110.157016 DO - 10.1104/pp.110.157016 ID - Zeng2010 ER - TY - JOUR AU - Clarke, C. R. AU - Chinchilla, D. AU - Hind, S. R. AU - Taguchi, F. AU - Miki, R. AU - Ichinose, Y. AU - Martin, G. B. AU - Leman, S. AU - Felix, G. AU - Vinatzer, B. A. PY - 2013 DA - 2013// TI - Allelic variation in two distinct Pseudomonas syringaeflagellin epitopes modulates the strength of plant immune responses but not bacterial motility JO - New Phytol VL - 200 UR - https://doi.org/10.1111/nph.12408 DO - 10.1111/nph.12408 ID - Clarke2013 ER - TY - JOUR AU - Rosli, H. AU - Zheng, Y. AU - Pombo, M. AU - Zhong, S. AU - Bombarely, A. AU - Fei, Z. AU - Collmer, A. AU - Martin, G. PY - 2013 DA - 2013// TI - Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity JO - Genome Biol VL - 14 UR - https://doi.org/10.1186/gb-2013-14-12-r139 DO - 10.1186/gb-2013-14-12-r139 ID - Rosli2013 ER - TY - CHAP AU - Martin, G. B. ED - Martin, F. ED - Kamoun, S. PY - 2012 DA - 2012// TI - Suppression and activation of the plant immune system by Pseudomonas syringaeeffectors AvrPto and AvrPtoB BT - Effectors in Plant-Microbe Interactions PB - Wiley-Blackwell, John Wiley and Sons CY - London ID - Martin2012 ER - TY - JOUR AU - Cunnac, S. AU - Chakravarthy, S. AU - Kvitko, B. H. AU - Russell, A. B. AU - Martin, G. B. AU - Collmer, A. PY - 2011 DA - 2011// TI - Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1013031108 DO - 10.1073/pnas.1013031108 ID - Cunnac2011 ER - TY - JOUR AU - Martin, G. B. AU - Brommonschenkel, S. H. AU - Chunwongse, J. AU - Frary, A. AU - Ganal, M. W. AU - Spivey, R. AU - Wu, T. AU - Earle, E. D. AU - Tanksley, S. D. PY - 1993 DA - 1993// TI - Map-based cloning of a protein kinase gene conferring disease resistance in tomato JO - Science VL - 262 UR - https://doi.org/10.1126/science.7902614 DO - 10.1126/science.7902614 ID - Martin1993 ER - TY - JOUR AU - Tang, X. AU - Frederick, R. D. AU - Zhou, J. AU - Halterman, D. A. AU - Jia, Y. AU - Martin, G. B. PY - 1996 DA - 1996// TI - Initiation of plant disease resistance by physical interaction of AvrPto and Pto kinase JO - Science VL - 274 UR - https://doi.org/10.1126/science.274.5295.2060 DO - 10.1126/science.274.5295.2060 ID - Tang1996 ER - TY - JOUR AU - Salmeron, J. M. AU - Oldroyd, G. E. D. AU - Rommens, C. M. T. AU - Scofield, S. R. AU - Kim, H. S. AU - Lavelle, D. T. AU - Dahlbeck, D. AU - Staskawicz, B. J. PY - 1996 DA - 1996// TI - Tomato Prf is a member of the leucine-rich repeat class of plant disease resistance genes and lies embedded within the Pto kinase gene cluster JO - Cell VL - 86 UR - https://doi.org/10.1016/S0092-8674(00)80083-5 DO - 10.1016/S0092-8674(00)80083-5 ID - Salmeron1996 ER - TY - JOUR AU - Mysore, K. S. AU - Crasta, O. R. AU - Tuori, R. P. AU - Folkerts, O. AU - Swirsky, P. B. AU - Martin, G. B. PY - 2002 DA - 2002// TI - Comprehensive transcript profiling of Pto- and Prf-mediated host defense responses to infection by Pseudomonas syringae pv. tomato JO - Plant J VL - 32 UR - https://doi.org/10.1046/j.1365-313X.2002.01424.x DO - 10.1046/j.1365-313X.2002.01424.x ID - Mysore2002 ER - TY - JOUR AU - Tsuda, K. AU - Katagiri, F. PY - 2010 DA - 2010// TI - Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity JO - Curr Opin Plant Biol VL - 13 UR - https://doi.org/10.1016/j.pbi.2010.04.006 DO - 10.1016/j.pbi.2010.04.006 ID - Tsuda2010 ER - TY - JOUR AU - Katagiri, F. AU - Tsuda, K. PY - 2010 DA - 2010// TI - Understanding the plant immune system JO - Mol Plant Microbe Interact VL - 23 UR - https://doi.org/10.1094/MPMI-04-10-0099 DO - 10.1094/MPMI-04-10-0099 ID - Katagiri2010 ER - TY - JOUR AU - Tao, Y. AU - Xie, Z. AU - Chen, W. AU - Glazebrook, J. AU - Chang, H. S. AU - Han, B. AU - Zhu, T. AU - Zou, G. AU - Katagiri, F. PY - 2003 DA - 2003// TI - Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae JO - Plant Cell VL - 15 UR - https://doi.org/10.1105/tpc.007591 DO - 10.1105/tpc.007591 ID - Tao2003 ER - TY - JOUR AU - Navarro, L. AU - Zipfel, C. AU - Rowland, O. AU - Keller, I. AU - Robatzek, S. AU - Boller, T. AU - Jones, J. D. PY - 2004 DA - 2004// TI - The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis JO - Plant Physiol VL - 135 UR - https://doi.org/10.1104/pp.103.036749 DO - 10.1104/pp.103.036749 ID - Navarro2004 ER - TY - JOUR AU - Tsuda, K. AU - Sato, M. AU - Glazebrook, J. AU - Cohen, J. D. AU - Katagiri, F. PY - 2008 DA - 2008// TI - Interplay between MAMP-triggered and SA-mediated defense responses JO - Plant J VL - 53 UR - https://doi.org/10.1111/j.1365-313X.2007.03369.x DO - 10.1111/j.1365-313X.2007.03369.x ID - Tsuda2008 ER - TY - JOUR AU - Tsuda, K. AU - Sato, M. AU - Stoddard, T. AU - Glazebrook, J. AU - Katagiri, F. PY - 2009 DA - 2009// TI - Network properties of robust immunity in plants JO - PLoS Genet VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000772 DO - 10.1371/journal.pgen.1000772 ID - Tsuda2009 ER - TY - JOUR AU - Wang, Z. AU - Gerstein, M. AU - Snyder, M. PY - 2009 DA - 2009// TI - RNA-Seq: a revolutionary tool for transcriptomics JO - Nat Rev VL - 10 UR - https://doi.org/10.1038/nrg2484 DO - 10.1038/nrg2484 ID - Wang2009 ER - TY - JOUR AU - Ansorge, W. J. PY - 2009 DA - 2009// TI - Next generation DNA sequencing techniques JO - Nat Biotechnol VL - 25 ID - Ansorge2009 ER - TY - JOUR AU - Haas, B. J. AU - Zody, M. C. PY - 2010 DA - 2010// TI - Advancing RNA-Seq analysis JO - Nat Biotechnol VL - 28 UR - https://doi.org/10.1038/nbt0510-421 DO - 10.1038/nbt0510-421 ID - Haas2010 ER - TY - JOUR AU - Wang, L. AU - Li, P. AU - Brutnell, T. P. PY - 2010 DA - 2010// TI - Exploring plant transcriptome using ultra high-throughput sequencing JO - Brief Funct Genomics VL - 9 UR - https://doi.org/10.1093/bfgp/elp057 DO - 10.1093/bfgp/elp057 ID - Wang2010 ER - TY - JOUR AU - Salmeron, J. M. AU - Barker, S. J. AU - Carland, F. M. AU - Mehta, A. Y. AU - Staskawicz, B. J. PY - 1994 DA - 1994// TI - Tomato mutants altered in bacterial disease resistance provide evidence for a new controlling pathogen recognition JO - Plant Cell VL - 6 UR - https://doi.org/10.1105/tpc.6.4.511 DO - 10.1105/tpc.6.4.511 ID - Salmeron1994 ER - TY - STD TI - iTAK - Plant Transcription factor and Protein Kinase Identifier and Classifier [], [http://bioinfo.bti.cornell.edu/cgi-bin/itak/index.cgi] UR - http://bioinfo.bti.cornell.edu/cgi-bin/itak/index.cgi ID - ref31 ER - TY - JOUR AU - del Pozo, O. AU - Pedley, K. F. AU - Martin, G. B. PY - 2004 DA - 2004// TI - MAPKKKa is a positive regulator of cell death associated with both plant immunity and disease JO - EMBO J VL - 23 UR - https://doi.org/10.1038/sj.emboj.7600283 DO - 10.1038/sj.emboj.7600283 ID - del Pozo2004 ER - TY - JOUR AU - Ekengren, S. K. AU - Liu, Y. AU - Schiff, M. AU - Dinesh-Kumar, S. P. AU - Martin, G. B. PY - 2003 DA - 2003// TI - Two MAPK cascades, NPR1, and TGA transcription factors play a role in Pto-mediated disease resistance in tomato JO - Plant J VL - 36 UR - https://doi.org/10.1046/j.1365-313X.2003.01944.x DO - 10.1046/j.1365-313X.2003.01944.x ID - Ekengren2003 ER - TY - JOUR AU - Wulf, J. AU - Pascuzzi, P. E. AU - Fahmy, A. AU - Martin, G. B. AU - Nicholson, L. K. PY - 2004 DA - 2004// TI - The solution structure of type III effector protein AvrPto reveals conformational and dynamic features important for plant pathogenesis JO - Structure VL - 12 UR - https://doi.org/10.1016/j.str.2004.04.017 DO - 10.1016/j.str.2004.04.017 ID - Wulf2004 ER - TY - JOUR AU - Wei, C. F. AU - Kvitko, B. H. AU - Shimizu, R. AU - Crabill, E. AU - Alfano, J. R. AU - Lin, N. C. AU - Martin, G. B. AU - Huang, H. C. AU - Collmer, A. PY - 2007 DA - 2007// TI - A Pseudomonas syringae pv. tomato DC3000 mutant lacking the type III effector HopQ1-1 is able to cause disease in the model plant Nicotiana benthamiana JO - Plant J VL - 51 UR - https://doi.org/10.1111/j.1365-313X.2007.03126.x DO - 10.1111/j.1365-313X.2007.03126.x ID - Wei2007 ER - TY - JOUR AU - Rosebrock, T. R. AU - Zeng, L. AU - Brady, J. J. AU - Abramovitch, R. B. AU - Xiao, F. AU - Martin, G. B. PY - 2007 DA - 2007// TI - A bacterial E3 ubiquitin ligase targets a host protein kinase to disrupt plant immunity JO - Nature VL - 448 UR - https://doi.org/10.1038/nature05966 DO - 10.1038/nature05966 ID - Rosebrock2007 ER - TY - JOUR AU - Bendahmane, A. AU - Querci, M. AU - Kanyuka, K. AU - Baulcombe, D. C. PY - 2000 DA - 2000// TI - Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato JO - Plant J VL - 21 UR - https://doi.org/10.1046/j.1365-313x.2000.00654.x DO - 10.1046/j.1365-313x.2000.00654.x ID - Bendahmane2000 ER - TY - JOUR AU - Rentel, M. C. AU - Leonelli, L. AU - Dahlbeck, D. AU - Zhao, B. AU - Staskawicz, B. J. PY - 2008 DA - 2008// TI - Recognition of the Hyaloperonospora parasiticaeffector ATR13 triggers resistance against oomycete, bacterial, and viral pathogens JO - Proc Natl Acad Sci U S A VL - 105 UR - https://doi.org/10.1073/pnas.0711215105 DO - 10.1073/pnas.0711215105 ID - Rentel2008 ER - TY - JOUR AU - Sacco, M. A. AU - Koropacka, K. AU - Grenier, E. AU - Jaubert, M. J. AU - Blanchard, A. AU - Goverse, A. AU - Smant, G. AU - Moffett, P. PY - 2009 DA - 2009// TI - The cyst nematode SPRYSEC protein RBP-1 elicits Gpa2- and RanGAP2-dependent plant cell death JO - PLoS Pathog VL - 5 UR - https://doi.org/10.1371/journal.ppat.1000564 DO - 10.1371/journal.ppat.1000564 ID - Sacco2009 ER - TY - JOUR AU - Lacomme, C. AU - Santa Cruz, S. PY - 1999 DA - 1999// TI - Bax-induced cell death in tobacco is similar to the hypersensitive response JO - Proc Natl Acad Sci U S A VL - 96 UR - https://doi.org/10.1073/pnas.96.14.7956 DO - 10.1073/pnas.96.14.7956 ID - Lacomme1999 ER - TY - JOUR AU - Xin, X. -. F. AU - He, S. Y. PY - 2013 DA - 2013// TI - Pseudomonas syringae pv. tomato DC3000: a model pathogen for probing disease susceptibility and hormone signaling in plants JO - Annu Rev Phytopathol VL - 51 UR - https://doi.org/10.1146/annurev-phyto-082712-102321 DO - 10.1146/annurev-phyto-082712-102321 ID - Xin2013 ER - TY - JOUR AU - Mur, L. A. J. AU - Kenton, P. AU - Lloyd, A. J. AU - Ougham, H. AU - Prats, E. PY - 2008 DA - 2008// TI - The hypersensitive response; the centenary is upon us but how much do we know? JO - J Exp Bot VL - 59 UR - https://doi.org/10.1093/jxb/erm239 DO - 10.1093/jxb/erm239 ID - Mur2008 ER - TY - JOUR AU - Coll, N. S. AU - Epple, P. AU - Dangl, J. L. PY - 2011 DA - 2011// TI - Programmed cell death in the plant immune system JO - Cell Death Differ VL - 18 UR - https://doi.org/10.1038/cdd.2011.37 DO - 10.1038/cdd.2011.37 ID - Coll2011 ER - TY - JOUR AU - Kang, L. AU - Li, J. AU - Zhao, T. AU - Xiao, F. AU - Tang, X. AU - Thilmony, R. AU - He, S. AU - Zhou, J. -. M. PY - 2003 DA - 2003// TI - Interplay of the Arabidopsisnonhost resistance gene NHO1 with bacterial virulence JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.0637377100 DO - 10.1073/pnas.0637377100 ID - Kang2003 ER - TY - JOUR AU - Li, X. AU - Lin, H. AU - Zhang, W. AU - Zou, Y. AU - Zhang, J. AU - Tang, X. AU - Zhou, J. -. M. PY - 2005 DA - 2005// TI - Flagellin induces innate immunity in nonhost interactions that is suppressed by Pseudomonas syringae pv. tomatoeffectors JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0502425102 DO - 10.1073/pnas.0502425102 ID - Li2005 ER - TY - JOUR AU - He, P. AU - Shan, L. AU - Lin, N. C. AU - Martin, G. B. AU - Kemmerling, B. AU - Nurnberger, T. AU - Sheen, J. PY - 2006 DA - 2006// TI - Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsisinnate immunity JO - Cell VL - 125 UR - https://doi.org/10.1016/j.cell.2006.02.047 DO - 10.1016/j.cell.2006.02.047 ID - He2006 ER - TY - JOUR AU - Schulze, S. AU - Kay, S. AU - Buttner, D. AU - Egler, M. AU - Eschen-Lippold, L. AU - Hause, G. AU - Kruger, A. AU - Lee, J. AU - Muller, O. AU - Scheel, D. AU - Szczesny, R. AU - Thieme, F. AU - Bonas, U. PY - 2012 DA - 2012// TI - Analysis of new type III effectors from Xanthomonas uncovers XopB and XopS as suppressors of plant immunity JO - New Phytol VL - 195 UR - https://doi.org/10.1111/j.1469-8137.2012.04210.x DO - 10.1111/j.1469-8137.2012.04210.x ID - Schulze2012 ER - TY - JOUR AU - Kim, J. G. AU - Li, X. AU - Roden, J. A. AU - Taylor, K. W. AU - Aakre, C. D. AU - Su, B. AU - Lalonde, S. AU - Kirik, A. AU - Chen, Y. AU - Baranage, G. AU - McLane, H. AU - Martin, G. B. AU - Mudgett, M. B. PY - 2009 DA - 2009// TI - XanthomonasT3S effector XopN suppresses PAMP-triggered immunity and interacts with a tomato atypical receptor-like kinase and TFT1 JO - Plant Cell VL - 21 UR - https://doi.org/10.1105/tpc.108.063123 DO - 10.1105/tpc.108.063123 ID - Kim2009 ER - TY - JOUR AU - Zheng, X. AU - McLellan, H. AU - Fraiture, M. AU - Liu, X. AU - Boevink, P. C. AU - Gilroy, E. M. AU - Chen, Y. AU - Kandel, K. AU - Sessa, G. AU - Birch, P. R. AU - Brunner, F. PY - 2014 DA - 2014// TI - Functionally redundant RXLR effectors from Phytophthora infestansact at different steps to suppress early flg22-triggered immunity JO - PLoS Pathog VL - 10 UR - https://doi.org/10.1371/journal.ppat.1004057 DO - 10.1371/journal.ppat.1004057 ID - Zheng2014 ER - TY - JOUR AU - Ichimura, K. AU - Shinozaki, K. AU - Tena, G. AU - Sheen, J. AU - Henry, Y. AU - Champion, A. AU - Kreis, M. AU - Zhang, S. Q. AU - Hirt, H. AU - Wilson, C. AU - Heberle-Bors, E. AU - Ellis, B. E. AU - Morris, P. C. AU - Innes, R. W. AU - Ecker, J. R. AU - Scheel, D. AU - Klessig, D. F. AU - Machida, Y. AU - Mundy, J. AU - Ohashi, Y. AU - Walker, J. C. AU - Grp, M. PY - 2002 DA - 2002// TI - Mitogen-activated protein kinase cascades in plants: a new nomenclature JO - Trends Plant Sci VL - 7 UR - https://doi.org/10.1016/S1360-1385(02)02302-6 DO - 10.1016/S1360-1385(02)02302-6 ID - Ichimura2002 ER - TY - JOUR AU - Martin, G. B. AU - Bogdanove, A. J. AU - Sessa, G. PY - 2003 DA - 2003// TI - Understanding the functions of plant disease resistance proteins JO - Annu Rev Plant Biol VL - 54 UR - https://doi.org/10.1146/annurev.arplant.54.031902.135035 DO - 10.1146/annurev.arplant.54.031902.135035 ID - Martin2003 ER - TY - JOUR AU - Bernoux, M. AU - Ellis, J. G. AU - Dodds, P. N. PY - 2011 DA - 2011// TI - New insights in plant immunity signaling activation JO - Curr Opin Plant Biol VL - 14 UR - https://doi.org/10.1016/j.pbi.2011.05.005 DO - 10.1016/j.pbi.2011.05.005 ID - Bernoux2011 ER - TY - JOUR AU - Jin, H. AU - Liu, Y. AU - Yang, K. Y. AU - Kim, C. Y. AU - Baker, B. AU - Zhang, S. PY - 2003 DA - 2003// TI - Function of a mitogen-activated protein kinase pathway in N gene-mediated resistance in tobacco JO - Plant J VL - 33 UR - https://doi.org/10.1046/j.1365-313X.2003.01664.x DO - 10.1046/j.1365-313X.2003.01664.x ID - Jin2003 ER - TY - JOUR AU - Oh, C. S. AU - Pedley, K. F. AU - Martin, G. B. PY - 2010 DA - 2010// TI - Tomato 14-3-3 protein 7 positively regulates immunity-associated programmed cell death by enhancing protein abundance and signaling ability of MAPKKK alpha JO - Plant Cell VL - 22 UR - https://doi.org/10.1105/tpc.109.070664 DO - 10.1105/tpc.109.070664 ID - Oh2010 ER - TY - JOUR AU - Cho, H. S. AU - Yoon, G. M. AU - Lee, S. S. AU - Kim, Y. A. AU - Hwang, I. AU - Choi, D. AU - Pai, H. -. S. PY - 2001 DA - 2001// TI - A novel dual-specificity protein kinase targeted to the chloroplast in tobacco JO - FEBS Lett VL - 497 UR - https://doi.org/10.1016/S0014-5793(01)02439-5 DO - 10.1016/S0014-5793(01)02439-5 ID - Cho2001 ER - TY - JOUR AU - Rudrabhatla, P. AU - Reddy, M. M. AU - Rajasekharan, R. PY - 2006 DA - 2006// TI - Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases JO - Plant Mol Biol VL - 60 UR - https://doi.org/10.1007/s11103-005-4109-7 DO - 10.1007/s11103-005-4109-7 ID - Rudrabhatla2006 ER - TY - JOUR AU - Macho, A. P. AU - Schwessinger, B. AU - Ntoukakis, V. AU - Brutus, A. AU - Segonzac, C. AU - Roy, S. AU - Kadota, Y. AU - Oh, M. H. AU - Sklenar, J. AU - Derbyshire, P. AU - Lozano-Duran, R. AU - Malinovsky, F. G. AU - Monaghan, J. AU - Menke, F. L. AU - Huber, S. C. AU - He, S. Y. AU - Zipfel, C. PY - 2014 DA - 2014// TI - A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation JO - Science VL - 343 UR - https://doi.org/10.1126/science.1248849 DO - 10.1126/science.1248849 ID - Macho2014 ER - TY - JOUR AU - Bayer, R. G. AU - Stael, S. AU - Rocha, A. G. AU - Mair, A. AU - Vothknecht, U. C. AU - Teige, M. PY - 2012 DA - 2012// TI - Chloroplast-localized protein kinases: a step forward towards a complete inventory JO - J Exp Bot VL - 63 UR - https://doi.org/10.1093/jxb/err377 DO - 10.1093/jxb/err377 ID - Bayer2012 ER - TY - JOUR AU - Zhong, S. AU - Joung, J. G. AU - Zheng, Y. AU - Chen, Y. R. AU - Liu, B. AU - Shao, Y. AU - Xiang, J. Z. AU - Fei, Z. AU - Giovannoni, J. J. PY - 2011 DA - 2011// TI - High-throughput illumina strand-specific RNA sequencing library preparation JO - Cold Spring Harb Protoc VL - 2011 UR - https://doi.org/10.1101/pdb.prot5652 DO - 10.1101/pdb.prot5652 ID - Zhong2011 ER - TY - STD TI - Tomato Functional Genomics Database [], [http://ted.bti.cornell.edu/] UR - http://ted.bti.cornell.edu/ ID - ref60 ER - TY - STD TI - VIGS Tool [], [http://solgenomics.net/tools/vigs] UR - http://solgenomics.net/tools/vigs ID - ref61 ER - TY - JOUR AU - Untergasser, A. AU - Cutcutache, I. AU - Koressaar, T. AU - Ye, J. AU - Faircloth, B. C. AU - Remm, M. AU - Rozen, S. G. PY - 2012 DA - 2012// TI - Primer3–new capabilities and interfaces JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks596 DO - 10.1093/nar/gks596 ID - Untergasser2012 ER - TY - JOUR AU - Liu, Y. AU - Schiff, M. AU - Dinesh-Kumar, S. P. PY - 2002 DA - 2002// TI - Virus-induced gene silencing in tomato JO - Plant J VL - 31 UR - https://doi.org/10.1046/j.1365-313X.2002.01394.x DO - 10.1046/j.1365-313X.2002.01394.x ID - Liu2002 ER - TY - JOUR AU - Velasquez, A. C. AU - Chakravarthy, S. AU - Martin, G. B. PY - 2009 DA - 2009// TI - Virus-induced gene silencing (VIGS) in Nicotiana benthamianaand tomato JO - J Vis Exp VL - 28 ID - Velasquez2009 ER - TY - JOUR AU - Liu, D. AU - Shi, L. AU - Han, C. AU - Yu, J. AU - Li, D. AU - Zhang, Y. PY - 2012 DA - 2012// TI - Validation of reference genes for gene expression studies in virus-infected Nicotiana benthamianausing quantitative real-time PCR JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046451 DO - 10.1371/journal.pone.0046451 ID - Liu2012 ER - TY - JOUR AU - Boyle, E. I. AU - Weng, S. AU - Gollub, J. AU - Jin, H. AU - Botstein, D. AU - Cherry, J. M. AU - Sherlock, G. PY - 2004 DA - 2004// TI - GO::TermFinder–open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth456 DO - 10.1093/bioinformatics/bth456 ID - Boyle2004 ER - TY - JOUR AU - Gouy, M. AU - Guindon, S. AU - Gascuel, O. PY - 2010 DA - 2010// TI - SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msp259 DO - 10.1093/molbev/msp259 ID - Gouy2010 ER - TY - STD TI - FigTree [], [http://tree.bio.ed.ac.uk/software/figtree] UR - http://tree.bio.ed.ac.uk/software/figtree ID - ref68 ER - TY - JOUR AU - Consortium, T. U. PY - 2014 DA - 2014// TI - Activities at the Universal Protein Resource (UniProt) JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1140 DO - 10.1093/nar/gkt1140 ID - Consortium2014 ER - TY - JOUR AU - Stoesser, G. AU - Baker, W. AU - van den Broek, A. AU - Camon, E. AU - Garcia-Pastor, M. AU - Kanz, C. AU - Kulikova, T. AU - Lombard, V. AU - Lopez, R. AU - Parkinson, H. AU - Redaschi, N. AU - Sterk, P. AU - Stoehr, P. AU - Tuli, M. A. PY - 2001 DA - 2001// TI - The EMBL nucleotide sequence database JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.1.17 DO - 10.1093/nar/29.1.17 ID - Stoesser2001 ER - TY - STD TI - PUBMED [], [http://www.ncbi.nlm.nih.gov/pubmed/] UR - http://www.ncbi.nlm.nih.gov/pubmed/ ID - ref71 ER - TY - JOUR AU - Camacho, C. AU - Coulouris, G. AU - Avagyan, V. AU - Ma, N. AU - Papadopoulos, J. AU - Bealer, K. AU - Madden, T. PY - 2009 DA - 2009// TI - BLAST+: architecture and applications JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-421 DO - 10.1186/1471-2105-10-421 ID - Camacho2009 ER - TY - JOUR AU - Goto, N. AU - Prins, P. AU - Nakao, M. AU - Bonnal, R. AU - Aerts, J. AU - Katayama, T. PY - 2010 DA - 2010// TI - BioRuby: bioinformatics software for the Ruby programming language JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq475 DO - 10.1093/bioinformatics/btq475 ID - Goto2010 ER -