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Table 2 Statistics for CIRS-seq de novo inferred secondary structures

From: Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

  

Unconstrained (MFE)

CIRS-seq constrained

ENSEMBL ID

Symbol

PPV

Sensitivity

PPV

Sensitivity

ENSMUST00000101806

U2

0.68

0.89

1.00

1.00

ENSMUST00000083242

U12

0.80

0.84

1.00

0.95

ENSMUST00000082389

mt-Tv

0.22

0.20

1.00

1.00

ENSMUST00000083422

mt-Tt

0.41

0.35

0.81

0.85

Average

0.53

0.57

0.95

0.95

  1. Positive predictive value (PPV) and sensitivity measures calculated for both the unconstrained minimum free energy (MFE) and CIRS-seq constrained structures.
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Genome Biology

ISSN: 1474-760X

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