Skip to main content

Table 2 Statistics for CIRS-seq de novo inferred secondary structures

From: Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

   Unconstrained (MFE) CIRS-seq constrained
ENSEMBL ID Symbol PPV Sensitivity PPV Sensitivity
ENSMUST00000101806 U2 0.68 0.89 1.00 1.00
ENSMUST00000083242 U12 0.80 0.84 1.00 0.95
ENSMUST00000082389 mt-Tv 0.22 0.20 1.00 1.00
ENSMUST00000083422 mt-Tt 0.41 0.35 0.81 0.85
Average 0.53 0.57 0.95 0.95
  1. Positive predictive value (PPV) and sensitivity measures calculated for both the unconstrained minimum free energy (MFE) and CIRS-seq constrained structures.