Figure 3

Analysis of non-coding mutations using OncoCis, RegulomeDB and Funseq. (A) A summary of mutation annotations from 17 whole breast cancer genomes by OncoCis. (B) Overlap of mutations annotated as within DHSs from the whole breast cancer genomes using OncoCis (from HMEC line), RegulomeDB (mutations within categories 2 to 5) and Funseq (mutations within DHSs). (C) Overlap of mutations annotated as likely to be functionally important in RegulomeDB (mutations within category 2), Funseq (mutations within `sensitive’ regions) and mutations within cell-specific (HMEC) DHS regions by OncoCis.