From: FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
Variant | GERP | Functional annotations | Gain of motif | Associated gene | Network | Recurrence in samples | Recurrence database | Score |
---|---|---|---|---|---|---|---|---|
chr5: 1295228 | -1.46 | DHS, Enhancer, TFP (E2F6, EGR1, ELF1, GABPA, HDAC2, MAX, MYC, SIN3A, TCF12, USF1, ZBTB7A, ZEB1) | Motif: Ets_known10 | TERT (promoter) (Cancer gene) | Protein-protein interaction Centrality: 0.798 | 2/100 Medulloblastoma samples | 5/88 Liver samples; 54 COSMIC samples | 2.69 |
G → A | Position: 1295223 – 1295229 | |||||||
 | Strand: + | |||||||
Score: 1.893 → 5.743 |