Figure 8
From: A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data
Two-gene comparison of sAGP-CCF distribution, with values for TP53 and PIK3CA in the same samples linked by lines, stratified by PAM50 gene expression subtypes. Groups with interacting co-occurrence patterns are shown by different line colors. Black: high CCF and sAGP in TP53, low in PIK3CA. Red and green: high sAGP for both genes, high CCR for TP53 (red) or high CCF for PIK3CA (green). Blue: high sAGP for TP53 and high CCF for PIK3CA.