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Table 1 Simulated bias in variant sites that are polymorphic with MAF >1% in Europeans, from single-end read simulations based on genome sequence and aligned with BWA

From: Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies

  SNPs Indels Total
(90.84% of total) (9.16% of total)
Variants (n) 8,650,740 872,262 9,523,002
Variants with >0% bias 1,822,445 550,423 2,372,868
(21.06%) (63.10%) (24.91%)
Variants with >5% bias 1,088,730 397,399 1,486,129
(12.58% of SNPs) (45.56% of indels) (15.60% of total)