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Table 2 Fo -responsive expression pattern of rdd -downregulated genes in WT Col-0

From: DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis

 

Allrdd-downregulated genes

rdd-downregulated stress response genes identified by MapMan

Allrdd-downregulated stress response genes

Total genes used in the analysis (n)

279

99

160

Genes showing RNA-seq reads at all three time points (n)

124

40

80

Genes showing ≥2-fold upregulation by Fo infection (n)

46

15

30

Genes showing ≥2-fold downregulation by Fo infection (n)

26

8

17

Genes showing mixed up- and downregulation by Fo infection (n)

14

6

10

Total genes showing ≥2-fold differential expression in Fo-infected plants (n)

86 (69.4%)a

29 (72.5%)

57 (71.2%)

  1. aThis is the percentage against the number of genes showing RNA-seq reads at all three time points.