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Table 1 SNP distribution among the M. truncatula chromosomes

From: The small RNA diversity from Medicago truncatularoots under biotic interactions evidences the environmental plasticity of the miRNAome

  

Number of precursors

Precursors with at least one SNP

Precursors with at least one SNP in mature miRNA

Precursors with a SNP at position 10 or 11 in mature miRNA

 

SNP number

Total

Conserved

Novel

Total

Conserved

Novel

Total

Conserved

Novel

Total

Conserved

Others

Chr 1

198,291

27

9

18

11

4

7

2

0

2

0

  

Chr 2

266,911

54

5

49

28

4

24

6

0

6

2

 

2

Chr 3

317,117

61

7

54

24

7

17

8

0

8

0

  

Chr 4

302,215

78

7

71

32

5

27

14

0

14

3

 

3

Chr 5

462,047

92

18

74

44

12

32

12

3

9

2

1

1

Chr 6

140,777

45

2

43

16

1

15

7

0

7

0

  

Chr 7

312,760

82

7

75

49

3

46

19

1

18

3

 

3

Chr 8

227,898

46

6

40

21

4

17

6

0

6

0

  

Chr 0

88,473

44

5

39

6

2

4

2

2

0

0

  

Total

2,316,489

529

66

463

231

42

189

76

6

70

10

1

9

      

Percentage of precursors

 

Percentage of precursors

 

Percentage of precursors

      

63.6

40.8

 

9.1

15.1

 

1.5

1.9

         

Percentage of polymorphic precursors

 

Percentage of polymorphic precursors

         

14.3

37.0

 

16.7

12.9

  1. First column indicates the chromosome number. For each chromosome, the total number of SNPs, precursors, precursors with at least one SNP, precursors with at least one SNP in the mature miRNA sequence and precursors with a SNP at position 10 or 11 in mature miRNA are indicated for the conserved or novel miRNAs. Below, the percentage of precursors in each category is shown.