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Figure 2 | Genome Biology

Figure 2

From: Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content

Figure 2

Transposon methylation and expression. CG methylation levels of individual TEs plotted against their size (kb) and expression levels (Log2 RPKM (reads per kilobase per million mapped reads)) in FB. A three-dimensional scatter plot is shown from two views. TEs belonging to different classes are displayed as different color dots as indicated. Only TEs with detectable expression levels (RPKM >0) are shown; a total of 1,414 TEs for FB. The plane cut at log2 RPKM = 0 (corresponding to RPKM = 1) was set as a threshold for expressed TEs. The results of a similar analysis conducted on FLM and on TEs with undetectable expression levels are shown in Figure S9 in Additional file 1.

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Genome Biology

ISSN: 1474-760X

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