Figure 2

Selection of clusters displaying interesting gene co-regulation. (A) Profiles of the indicated clusters displaying the fold change expressions in the seven comparisons. The sentences on the left and the red arrows indicate the main message of the cluster. Y scale is log ratio. On the X scale, the following comparisons are shown: Col-0 + flg22 vs. Col-0, mpk3 vs. Col-0, mpk4 vs. Col-0, mpk6 vs. Col-0, mpk3 + flg22 vs. mpk3, mpk4 + flg22 vs. mpk4, mpk6 + flg22 vs. mpk6. Profiles are represented as boxplots, where the bottom and top of the box are the first and third quartiles and the band inside the box is the median. Data not included between the whiskers are represented by a dot. On top is indicated the percentage of genes differentially regulated (P value <0.05) in the different comparisons. ‘-’ indicates mock treatment and ‘+’ indicates flg22 treatment. (B) Kinetic behaviour of the cluster as predicted by the comparison with ‘late’ flg22-regulated genes.