Table 2 Wild-type intestine 3' UTR Apobec-1 RNA targets (>30% editing efficiency)
| Â | RNA | Chr | Position | Reference base | RNA-seq | Reads | Sanger | Edited/total |
|---|---|---|---|---|---|---|---|---|
1. | Cd36 | 5 | 17288955 (-) | G | 84% | 44 | 85% | (17/20) |
2. | Reps2 | X | 158851906 (-) | G | 75% | 12 | 50% | (10/20) |
3. | Siglec5 | 7 | 50614573 (+) | C | 72% | 43 | 10% | (2/20) |
4. | Fmn1 | 2 | 113556683 (+) | C | 71% | 17 | 65% | (13/20) |
5. | 0610010O12Rik | 18 | 36562329 (+) | C | 67% | 2900 | 55% | (11/20) |
6. | Mcmbp | 7 | 135841366 (-) | G | 63% | 155 | 30% | (7/23) |
7. | Man2a1 | 17 | 65104330 (+) | C | 60% | 119 | 15% | (3/20) |
8. | Herc2 | 7 | 63486942 (+) | C | 60% | 15 | 5% | (1/20) |
9. | Ddx60 | 8 | 64516163 (+) | C | 59% | 22 | 30% | (6/20) |
10. | Tmem195 | 12 | 38308269 (+) | C | 56% | 466 | 44% | (11/25) |
11. | Mtmr2 | 9 | 13610423 (+) | C | 53% | 19 | 25% | (5/20) |
12. | Cyp2c65 | 19 | 39168358 (+) | C | 50% | 1011 | 9.5% | (2/21) |
13 | Cnih | 14 | 47395982 (-) | G | 48% | 25 | 59% | (13/22) |
14. | Atp11c | X | 57477477 (-) | G | 46% | 13 | 5% | (1/19) |
15. | Sh3bgrl | X | 106356686 (+) | C | 45% | 83 | 35% | (7/20) |
16. | Fgl2 | 5 | 20883372 (+) | C | 42% | 72 | 33% | (7/21) |
17. | Nr1d2 | 14 | 19036726 (-) | G | 39% | 82 | 25% | (5/20) |
18. | Tmem135 | 7 | 96290044 (-) | G | 39% | 28 | 20% | (4/20) |
19. | Slc4a4 | 5 | 89668527 (+) | C | 38% | 21 | 45% | (9/20) |
20. | Dpyd | 3 | 119134696 (+) | C | 38% | 66 | 25% | (5/20) |
21. | Ttc9c | 19 | 8885447 (-) | G | 37% | 16 | 18% | (4/22) |
22. | Yes1 | 5 | 32989151 (+) | C | 36% | 22 | 30% | (6/20) |
23. | 1110020G09Rik | 15 | 9038469 (+) | C | 36% | 22 | 10% | (2/20) |
24. | Actr2 | 11 | 19963383 (-) | G | 35% | 52 | 41% | (9/22) |
25. | Kctd12 | 14 | 103379573 (-) | G | 35% | 63 | 28% | (5/18) |
26. | Nr3c1 | 18 | 39571801 (-) | G | 33% | 18 | 17% | (4/24) |
27. | Skil | 3 | 31018375 (+) | C | 33% | 16 | 5% | (1/20) |
28. | Ccny | 18 | 9315769 (-) | G | 32% | 25 | 25% | (5/20) |
29. | Rab1 | 11 | 20125336 (+) | C | 32% | 508 | 15% | (3/20) |
30. | mCG_2776 | 6 | 8378189 (+) | C | 31% | 36 | 20% | (4/20) |
31. | Lrba | 4 | 9503468 (+) | C | 31% | 37 | 6% | (1/16) |
32. | Dek | 13 | 47181166 (-) | G | 31% | 26 | 5% | (1/20) |