A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

Table 1 RefSeq genes differentially expressed

	Genes up	Genes down	Total genes differentially expressed
Normal versus early neoplasia	565 (4.1%)	190 (1.4%)	755 (5.5%)
Normal versus cancer	1,587 (11.6%)	1,610 (11.8%)	3,197 (23.4%)
Early neoplasia versus cancer	1,276 (9.4%)	1,321 (9.7%)	2,597 (19.0%)

Paired SAMseq analysis (n = 13,643), FDR <5%. Sixteen samples per class. Numbers and percentages reported are genes up- or down-regulated in early neoplasia relative to normal, and cancer relative to either normal tissue or early neoplasia, respectively.

ISSN: 1474-760X