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Table 1 Genus-level classification accuracy for three simulated metagenomes

From: Kraken: ultrafast metagenomic sequence classification using exact alignments

 

HiSeq

MiSeq

simBA-5

Classifier

Precision

Sensitivity

Precision

Sensitivity

Precision

Sensitivity

Megablast

99.03

79.00

92.44

75.76

96.93

93.67

NBC

82.33

82.33

77.78

77.78

97.64

97.64

PhymmBL

79.14

79.14

76.21

76.21

96.11

96.11

PhymmBL65

99.13

73.95

92.47

73.03

99.08

95.45

Kraken

99.20

77.15

94.71

73.46

99.90

91.25

Kraken-Q

99.12

76.31

94.69

70.41

99.92

89.54

MiniKraken

99.44

66.12

97.41

67.95

99.95

65.87

MiniKraken-Q

99.36

65.67

97.32

65.84

99.98

65.31

Kraken-GB

99.51

93.75

98.48

86.23

99.48

91.13