Figure 1

Data generation and results of test case 11. (a) Generation of contigs and read pairs for the test. (b) The test in graph form and the output of each scaffolder. Each node represents a 5 kb contig and each edge represents read pair evidence and is labelled with the read depth. Green nodes and edges mark the correct solution. Incorrect paths are coloured black. Numbers in brackets after each tool indicate the number of times that configuration was output by that tool. Tools with no number produced the same output on all runs.