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Table 1 Selected top categories enriched in genes containing editing sites near an edited Alu

From: Alu elements shape the primate transcriptome by cis-regulation of RNA editing

Category Term Count Percentagea Pvalue Fold enrichment Benjaminib False discovery rate
KEGG_PATHWAY hsa04142; lysosome 7 2.9 9.32 × 10-9 46.1 8.02 × 10-7 1.01 × 10-5
PFAM PF01352; KRAB box (Krueppel-associated box) 15 6.2 9.97 × 10-13 16.0 4.71 × 10-10 1.42 × 10-9
PANTHER_FAMILY PTHR23224; zinc finger proteins 17 6.9 1.94 × 10-9 7.3 3.57 × 10-7 2.40 × 10-6
INTERPRO IPR013087; zinc finger, C2H2-type/integrase, DNA-binding 17 6.9 3.22 × 10-8 6.0 7.15 × 10-6 4.56 × 10-5
SP_PIR_KEYWORDS Alternative splicing 111 45.3 5.35 × 10-31 3.1 7.24 × 10-29 7.03 × 10-28
GOTERM_BP_ALL GO:0045449; regulation of transcription 43 17.5 8.91 × 10-7 2.2 5.22 × 10-4 0.0014
  1. aPercentage of genes with the term of total genes in analyzed list; bBenjamini–Hochberg corrected P value for multiple comparisons.