Table 2 All candidate hnRNPLL-regulated splicing events prioritized for RT-PCR confirmation
Gene | Intron location | Feature scores | Score | Rank | |||||
|---|---|---|---|---|---|---|---|---|---|
3′SS ratio | 5′SS ratio | Differential exon | Differential intron | Differential junction | Cryptic junctions | ||||
Ptprc | 1:140013603-140014330 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 1 |
Degs1 | 1:184207025-184208627 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 2 |
Ptprc | 1:140016744-140019032 | 1 | 1 | 1 | 1 | 1 | 0 | 5 | 3 |
Ptprc | 1:140012220-140013530 | 1 | 0 | 1 | 1 | 1 | 1 | 5 | 4 |
Ptprc | 1:140019162-140022879 | 1 | 0 | 1 | 1 | 1 | 0 | 4 | 6 |
Slc12a7 | 13:73870786-73901144 | 1 | 0 | 0 | 1 | 1 | 1 | 4 | 7 |
Slc12a7 | 13:73901339-73921966 | 0 | 1 | 0 | 1 | 1 | 1 | 4 | 8 |
Ptprc | 1:140014472-140016596 | 1 | 1 | 1 | 1 | 1 | 0 | 5 | 11 |
Rab3gap2 | 1:187087739-187090779 | 1 | 0 | 0 | 1 | 1 | 1 | 4 | 13 |
Il7r | 15:9440015-9440865 | 0 | 0 | 1 | 1 | 0 | 1 | 3 | 15 |
Ctse | 1:133535135-133558452 | 0 | 0 | 1 | 1 | 0 | 1 | 3 | 16 |
Sidt1 | 16:44258155-44259545 | 0 | 0 | 0 | 1 | 1 | 1 | 3 | 17 |
Il7r | 15:9438538-9439920 | 0 | 0 | 1 | 1 | 0 | 1 | 3 | 20 |
Il7r | 15:9438114-9438461 | 0 | 0 | 1 | 1 | 0 | 1 | 3 | 21 |
Ash1l | 3:88871164-88872908 | 0 | 1 | 0 | 1 | 0 | 1 | 3 | 23 |
Senp2 | 16:22032238-22036542 | 1 | 1 | 0 | 1 | 0 | 1 | 4 | 24 |
Rnf167 | 11:70463837-70464265 | 0 | 1 | 0 | 0 | 1 | 1 | 3 | 26 |
D14Abb1e | 14:28263236-28272964 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 33 |
Sept7 | 9:25104073-25105396 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 37 |
Mapkapk3 | 9:107166096-107182976 | 0 | 1 | 0 | 1 | 0 | 1 | 3 | 44 |
Trim68 | 7:109828211-109828650 | 1 | 1 | 0 | 0 | 1 | 1 | 4 | 48 |
Sigirr | 7:148281217-148286377 | 1 | 0 | 0 | 0 | 1 | 1 | 3 | 50 |
Trpv2 | 11:62388103-62389048 | 1 | 0 | 0 | 0 | 1 | 1 | 3 | 62 |
Herc3 | 6:58824395-58826482 | 1 | 0 | 0 | 1 | 0 | 1 | 3 | 66 |
Ighg2c | 12:114524254-114525607 | 0 | 1 | 1 | 1 | 0 | 0 | 3 | 71 |
Pik3r4 | 9:105580651-105584514 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 80 |
Ikbke | 1:133162866-133166377 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 83 |
Cep110 | 2:35013309-35015767 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 84 |
Fcrl1 | 3:87185307-87185682 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 87 |
Mllt6 | 11:97538551-97539627 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 104 |
Rap1gds1 | 3:138619284-138620373 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 131 |
Lck | 4:129234700-129234869 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 163 |