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Table 2 All candidate hnRNPLL-regulated splicing events prioritized for RT-PCR confirmation

From: The RNA-binding protein hnRNPLL induces a T cell alternative splicing program delineated by differential intron retention in polyadenylated RNA

Gene Intron location Feature scores Score Rank
3′SS ratio 5′SS ratio Differential exon Differential intron Differential junction Cryptic junctions
Ptprc 1:140013603-140014330 1 1 1 1 1 1 6 1
Degs1 1:184207025-184208627 1 1 1 1 1 1 6 2
Ptprc 1:140016744-140019032 1 1 1 1 1 0 5 3
Ptprc 1:140012220-140013530 1 0 1 1 1 1 5 4
Ptprc 1:140019162-140022879 1 0 1 1 1 0 4 6
Slc12a7 13:73870786-73901144 1 0 0 1 1 1 4 7
Slc12a7 13:73901339-73921966 0 1 0 1 1 1 4 8
Ptprc 1:140014472-140016596 1 1 1 1 1 0 5 11
Rab3gap2 1:187087739-187090779 1 0 0 1 1 1 4 13
Il7r 15:9440015-9440865 0 0 1 1 0 1 3 15
Ctse 1:133535135-133558452 0 0 1 1 0 1 3 16
Sidt1 16:44258155-44259545 0 0 0 1 1 1 3 17
Il7r 15:9438538-9439920 0 0 1 1 0 1 3 20
Il7r 15:9438114-9438461 0 0 1 1 0 1 3 21
Ash1l 3:88871164-88872908 0 1 0 1 0 1 3 23
Senp2 16:22032238-22036542 1 1 0 1 0 1 4 24
Rnf167 11:70463837-70464265 0 1 0 0 1 1 3 26
D14Abb1e 14:28263236-28272964 0 0 0 0 1 1 2 33
Sept7 9:25104073-25105396 0 0 0 0 1 1 2 37
Mapkapk3 9:107166096-107182976 0 1 0 1 0 1 3 44
Trim68 7:109828211-109828650 1 1 0 0 1 1 4 48
Sigirr 7:148281217-148286377 1 0 0 0 1 1 3 50
Trpv2 11:62388103-62389048 1 0 0 0 1 1 3 62
Herc3 6:58824395-58826482 1 0 0 1 0 1 3 66
Ighg2c 12:114524254-114525607 0 1 1 1 0 0 3 71
Pik3r4 9:105580651-105584514 0 0 0 1 0 1 2 80
Ikbke 1:133162866-133166377 0 0 0 1 0 1 2 83
Cep110 2:35013309-35015767 0 0 0 0 1 1 2 84
Fcrl1 3:87185307-87185682 0 0 0 0 1 1 2 87
Mllt6 11:97538551-97539627 0 0 0 1 0 1 2 104
Rap1gds1 3:138619284-138620373 0 0 0 0 1 1 2 131
Lck 4:129234700-129234869 0 0 0 0 1 1 2 163
  1. Number of alternative splicing event types mapped within 1) all exons in expressed genes and 2) exons having at least 10% of intron retention in their 3′SS, and the mean number of the event types within randomly sampled exon sets of the same size.