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Table 1 Over–represented Gene Ontology (GO) terms of top 1,000 intron retention (IR) genes regulated by red and blue light

From: Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens

   Red light  
GO term P value
MF: structural constituent of ribosome 3.95E–29
CC: ribosome 9.50E–25
BP: translation 1.22E–22
CC: integral to membrane 1.19E–06
BP: cell redox homeostasis 1.96E–06
CC: mitochondrion 8.95E–05
MF: glycerone kinase activity 9.31E–05
A total of 1,000 genes were submitted to the GOBU functional enrichment tool, which resulted in 689 unique genes with annotations. Terms are ranked by P value of over–representation and are included in list if P<1E–04.
BP: Biological process; CC: Cellular component; MF: Molecular function.
   Blue light  
GO term P value
CC: chloroplast 4.67E–33
MF: structural constituent of ribosome 1.66E–29
CC: ribosome 5.14E–27
BP: translation 1.63E–20
BP: reductive pentose–phosphate cycle 1.47E–16
CC: photosystem II 2.36E–10
BP: photosynthesis, light harvesting 6.62E–10
CC: photosystem I 8.56E–10
CC: stromule 2.32E–09
MF: chlorophyll binding 2.53E–08
CC: thylakoid 6.47E–08
BP: photorespiration 1.00E–07
CC: chloroplast envelope 1.12E–07
BP: photosynthesis 3.92E–07
CC: oxygen evolving complex 5.16E–07
CC: cytosolic ribosome 3.22E–06
MF: rRNA binding 1.68E–05
BP: cell redox homeostasis 2.21E–05
BP: translational elongation 2.26E–05
MF: ribulose–bisphosphate carboxylase activity 2.86E–05
BP: nitrate assimilation 5.10E–05
MF: glycerone kinase activity 7.63E–05
  1. A total of 1,000 genes were submitted to the GOBU functional enrichment tool, which resulted in 733 unique genes with annotations. Terms are ranked by P value of over–representation and are included in list if P <1E–04.
  2. BP: Biological process; CC: Cellular component; MF: Molecular function.