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Table 1 Number of false differential expression genes predicted by each method at adjusted P values (or false discovery rate) ≤0.05 separated by gene read count quantiles.

From: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

Expression quantile Cuffdiff DESeq edgeR limmaQN limmaVoom PoissonSeq baySeq
100% (high expression) 28 5 3 0 0 7 1
75% 76 6 0 0 0 0 0
50% 84 27 1 2 0 0 0
25% (low expression) 5 9 0 87 0 0 0
Total 193 47 4 89 0 7 1