From: The mutational landscape of chromatin regulatory factors across 4,623 tumor samples
Site | Dataset name | Description | Authors | Obtained from | Tumor samples | References |
---|---|---|---|---|---|---|
Bladder | BLADDER UROTHELIAL TCGA | Bladder urothelial carcinoma | TCGA | Synapse | 98 | - |
Brain | BRAIN GLIOBASTOMA TCGA | Glioblastoma multiforme | TCGA | Synapse | 290 | [84] |
BRAIN GLIOBASTOMA JHU | Glioblastoma multiforme | John Hopkins University | ICGC DCC | 88 | [88] | |
BRAIN PEDIATRIC DKFZ | Pediatric brain tumors | DKFZ | ICGC DCC | 113 | ||
Breast | BREAST JHU | Breast cancer | Johns Hopkins University | ICGC DCC | 42 | [91] |
BREAST WTSI | Breast cancer | Welcome Trust/ Sanger Institute | ICGC DCC | 100 | [56] | |
BREAST TN UBC | Triple negative breast cancer | University of British Columbia | PubMed | 65 | [92] | |
BREAST TCGA | Breast invasive carcinoma | TCGA | Synapse | 762 | [93] | |
BREAST BROAD | Breast cancer | BROAD Institute | PubMed | 103 | [94] | |
BREAST ER + WU | ER + breast cancer | Washington University | PubMed | 77 | [38] | |
Colorectal | COLORECTAL ADENO JHU | Colorectal adenocarcinoma | Johns Hopkins University | ICGC DCC | 36 | [91] |
COLORECTAL ADENO TCGA | Colorectal adenocarcinoma | TCGA | Synapse | 193 | [28] | |
Head and neck | HEAD/NECK SQUAMOUS BROAD | Head and neck squamous cell carcinoma | Broad Institute | SM | 74 | [95] |
HEAD/NECK SQUAMOUS TCGA | Head and neck squamous cell carcinoma | TCGA | Synapse | 301 | - | |
Hematopo-ietic | CLL SPAIN | Chronic lymphocytic leukemia | Spanish Ministry of Science | ICGC DCC | 109 | |
CLL DFCI | Chronic lymphocytic leukemia | Dana Farber Cancer Institute | SM | 90 | [97] | |
AML TCGA | Acute myeloid leukemia | TCGA | Synapse | 196 | [98] | |
Kidney | KIDNEY CLEAR CELL TCGA | Kidney clear cell carcinoma | TCGA | Synapse | 417 | [99] |
Liver | LIVER IARC | Liver cancer | IACR | ICGC DCC | 24 | [100] |
Lung | LUNG ADENO WU | Lung adenocarcinoma | Washington University School of Medicine | ICGC DCC | 162 | [101] |
LUNG NON SMALL CELL MCW | Non small cell lung cancer | Medical College of Wisconsin | SM | 31 | [37] | |
LUNG SQUAMOUS TCGA | Lung squamous cell carcinoma | TCGA | Synapse | 174 | [102] | |
LUNG ADENO TCGA | Lung adenocarcinoma | TCGA | Synapse | 228 | - | |
LUNG SMALL CELL UCOLOGNE | Small cell lung cancer | University Cologne | SM | 27 | [58] | |
LUNG SMALL CELL JHU | Small cell lung cancer | Johns Hopkins University | SM | 42 | [103] | |
Ovary | OVARY TCGA | Ovarian serous cystadenocarcinoma | TCGA | Synapse | 316 | [104] |
Pancreas | PANCREAS JHU | Pancreatic cancer | Johns Hopkins University | ICGC DCC | 114 | [105] |
PANCREAS OICR | Pancreatic cancer | Ontario Institute for Cancer Research | ICGC DCC | 33 | [106] | |
PANCREAS QCMG | Pancreatic cancer | Queensland Centre for Medical Genomics | ICGC DCC | 67 | [106] | |
Stomach | GASTRIC PFIZER | Gastric cancer | Pfizer Worldwide Research and Development | SM | 22 | [107] |
Uterus | UTERI TCGA | Uterine corpus endometrioid carcinoma | TCGA | Synapse | 230 | - |