|
Organism
|
Assembled by
|
Number of contigs
|
N50
|
Number of structural differences
|
Number of discordant bases
|
QV
|
Number of indels > 5 bp
|
|---|
|
E. coli K12
|
MiSeq 100×
|
139
|
113,852
|
1
|
59
|
49.00
|
4
|
| |
454 50×
|
93
|
117,490
|
2
|
26
|
52.45
|
0
|
| |
MiSeq 100× + 200× CLR
|
2
|
2,367,319
|
2
|
11
|
56.26
|
2
|
| |
454 50× + 200× CLR
|
1
|
4,649,004
|
2
|
11
|
56.26
|
2
|
| |
CCS 25X + 200× CLR
|
1
|
4,653,267
|
0
|
14
|
55.22
|
2
|
| |
200× CLR
|
1
|
4,653,486
|
0
|
14
|
55.22
|
2
|
- Organism: the genome being assembled. Assembled by: the short-read data used for correction and/or assembly. Number of contigs: the number of contigs comprising the assembly. N50: N such that 50% of the genome is contained in contigs of length ≥N. Number of structural differences: the sum of inversions, relocations, and translocations versus the reference using GAGE metrics [37]. Number of discordant bases: total number of different bases when compared to the reference. QV: estimated from the number of indels and SNPs as . Indels >5 bp: the number of indels >5 bp reported by GAGE metrics [37]. Assemblies were generated as in Tables 2 and 3.
