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Table 1 Four types of genes with different decay patterns in cold stress response.

From: A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon

Type

Gene number

Change after cold-treatment

I

2,136

D↑ R ↑; D↓ R↓

II

3,344

D↑ R - ; D↓ R-

III

1,166

D↑ R ↓; D↓ R↑

IV

1,632

D- R ↑; D- R↓

  1. I, II, III, and IV: different mRNA decay patterns classified according to the variation tend of uncapped transcript/transcript abundance in cold stress. D: uncapped transcript abundance indicated by PARE reads; R: transcript abundance indicated by RNA-Seq reads. Log2 ratio of±1.5 was selected as the threshold of change.